Solanum pennellii: 107006079
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Entry
107006079 CDS
T04130
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107006079
03015 mRNA surveillance pathway
107006079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107006079
03041 Spliceosome [BR:
spen03041
]
107006079
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107006079
Spliceosome [BR:
spen03041
]
Complex C
Other components
EJC/TREX
107006079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
107006079
NCBI-ProteinID:
XP_015060216
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All DBs
Position
1:103643572..103648076
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AA seq
411 aa
AA seq
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MASGVVEKTEEELRKELFELNRQQREITERLKDPRGLRRGGGGPRSFVANGGRQRGVVRP
AERNDAEDQPAPKRRMSSTVVKIEEGEIAEDVSGAPRDANKEESIVEAIPRVAPANQNER
KPSNWLRRDGFQRPSKMDFDIPPPEPVPRVLPKNEDPKLVSRNKRMLGQLLGTLEKFRKE
DMQLSGTEAYMRRSDSLKRAEQRAREESEKLRQQEREQLDEKLKRDLTLRARLAAKAEEK
RLELLFLRWSEHHKKLANFIRTKAEPPIFYSFAKPLEEDSTLLEQRKDQIFEEWKAARRE
ELSQYQKKIAEQNIAKAEEEWKNILERRANKNVANLQETMDKELETHRLERGPKIRKIPG
VSNNEDEDVEDINVVEDDMMDDVLEVDENNQRSDENVKVEAGNGGPRIDEQ
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggcgtagtggagaagacggaggaagagctccgcaaagagctctttgaactc
aataggcaacaacgcgagattactgagcggcttaaggatccaagaggtcttcgacgcggt
ggcggaggtccacggagttttgttgccaatggtggccgccaacgcggcgttgttagacct
gccgagaggaatgatgcagaggatcagccagcacctaaaaggcgtatgtcttctactgtt
gtgaagattgaagagggggagattgctgaggatgtatccggagctccaagggatgcaaat
aaggaagagtcaattgtggaggcaatcccaagggtggcacctgccaaccagaatgaaagg
aagccatccaattggctacgaagagatggctttcaaaggccatccaaaatggattttgat
atacctccaccagagcctgtgccaagagtgttgcccaaaaacgaggatcctaaattggtt
agtaggaataagagaatgttggggcagctgctggggaccttggagaaattccggaaagaa
gacatgcagctttcagggacagaggcttacatgcggaggtcagattctttgaaaagggct
gagcaaagggcgcgcgaagaaagtgagaagttaagacaacaagagcgggagcagcttgat
gaaaagctgaaaagagatctgactcttcgagcacgtcttgctgctaaagctgaggagaag
aggctggaattgctgtttctccggtggagtgagcaccacaaaaaactagccaattttata
aggaccaaagccgagcccccgatcttttattcttttgccaaaccattggaagaagattca
accttacttgagcagagaaaagatcagatattcgaggaatggaaagctgcaaggagagag
gaattgtcgcaataccagaaaaaaattgctgaacagaatattgcaaaagctgaggaggaa
tggaaaaatattttagaaaggagagccaacaaaaatgttgcaaaccttcaagagacgatg
gacaaagagctagagactcataggcttgagcgtggacccaagattcgaaagattcctggt
gtcagcaacaatgaagatgaggatgttgaggatatcaatgttgtggaggatgatatgatg
gatgatgtgctagaagtggatgagaataaccagaggagtgatgaaaatgtgaaagttgaa
gcaggcaatggtggtccacggattgatgagcagtag
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