Solanum pennellii: 107006456
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Entry
107006456 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107006456
03041 Spliceosome [BR:
spen03041
]
107006456
03036 Chromosome and associated proteins [BR:
spen03036
]
107006456
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107006456
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107006456
mRNA cycle factors
Common to processing body (P body) and stress granule
107006456
Spliceosome [BR:
spen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107006456
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107006456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107006456
NCBI-ProteinID:
XP_015060492
LinkDB
All DBs
Position
1:791807..799187
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AA seq
604 aa
AA seq
DB search
MSMSWADSVSAAENPAGAPSKSAYVPPHLRNRPSTDPPAQASYAGAAASLGNDHSGYGVP
NMVGSRWSGQRNEYQSGYAGGGGRGGGWNGRSGGWDRGRDREVNPFTNDDSEPVTEQESS
AINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEAVNENIRRCKYVKPTPVQRHAIPISLA
GRDLMACAQTGSGKTAAFCFPIISGIMRGQFPRPPRPRMAFPLALILSPTRELSCQIHDE
AKKFSYQTGVRVVVAYGGAPINQQLRELERGVHILVATPGRLVDLLERARVSLQMIRYLA
LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAV
GRVGSSTDLIVQRVEYVQETDKRSHLMDLLHAQKENGVHGKQALTLVFVETKKGADALEH
WLCMNGFPATAIHGDRTQQEREHALRSFKTGYTPILVATDVAARGLDIPHVAHVVNFDLP
NDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARSLSDLMQEANQEVPAWLSRFAARST
YGGKNRRGGARFGARDFRRDSSYNRGASGGSTDYYGGGANMNSGYASGGYNASYGTAGVT
SAWD
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgtcgtgggctgattctgtttctgcagccgagaatccggctggagctccgtct
aagtcagcatatgttccaccacatttgcgaaacagaccttcaactgatcctcctgcacag
gcttcgtatgctggggctgctgcatcattaggtaatgaccatagtggttatggtgtccca
aatatggttgggagtcgttggagcggtcaaaggaatgaataccaatctggttatgctggt
ggaggaggacgtggtggtggttggaatggaagaagtggtggttgggatcgtgggagggat
cgggaagttaacccctttacaaacgatgatagtgaacctgttactgaacaagaaagttct
gcgatcaattttgatgcatatgaggatattccagtggaaacaagcggggataatgtgccc
cctcctgtgaatacttttgcagagattgatttaggtgaagctgtcaatgaaaatataagg
aggtgcaagtatgttaagccgacccctgtgcaacggcatgctatacctatttcactcgca
gggagggatttgatggcttgtgctcagactggttctggaaaaactgctgctttctgcttc
cccatcataagtgggatcatgaggggccaatttcctagacctcctcgtccacgtatggca
tttcctctagctcttattctctccccgactagggagctctcatgccaaattcatgacgag
gctaaaaagttctcatatcaaactggcgtcagggtggttgttgcctatggtggtgctcct
ataaaccaacagcttcgtgaattagagagaggtgtgcatattcttgtagcaacccctgga
cggttggtagatttacttgagagagcaagagtctcgttgcagatgataaggtatttggct
ctagacgaggctgaccggatgcttgacatgggtttcgaacctcaaataaggaaaatagtg
caacagatggacatgcctccgccaggtgtgcgacagaccatgcttttcagtgccactttt
ccaaaagagattcagagactggcctcagattttctatccagttatatctttttggccgtc
ggaagggtcggctctagcacagatttgattgtccaaagagttgaatatgttcaagagact
gacaagagaagtcacttgatggatcttcttcatgcgcagaaggaaaacggtgttcatggc
aagcaagctcttacccttgtttttgtggagactaagaagggagctgatgcactggagcat
tggctttgtatgaatggtttccctgctactgctattcatggtgatagaactcagcaggag
agagagcatgccctcagatccttcaaaactggttacacaccaatcttggttgcaacagat
gtggcagcacgtggtctcgatatcccccatgttgcacatgttgttaactttgatctgcca
aatgacattgatgactatgtgcaccgtattggaagaactggacgagcaggaaaaacaggt
ttagctactgccttcttcaacgagaacaattcttcactggcaagatcactatccgacctg
atgcaagaagcaaaccaagaagtacctgcttggctctctcgctttgctgctcgatccact
tatggaggcaagaatcgtcgtggtggagctcgttttggtgctcgtgactttcgaagagat
tcctcttataaccgaggtgctagtggtggttctaccgactattatggtggtggtgccaat
atgaacagtggctatgcatctggggggtataatgcatcgtatggaacagcaggcgtgact
agtgcatgggactaa
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