Solanum pennellii: 107006806
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Entry
107006806 CDS
T04130
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Module
spen_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107006806
Enzymes [BR:
spen01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107006806
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Beta_helix
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
107006806
NCBI-ProteinID:
XP_015060810
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Position
12:11054375..11056501
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AA seq
391 aa
AA seq
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MSFLVKNLPLFFTIFFLLFNSSIAIYNIKNYGAKSNGKIDSSTAFMSAWDAACASTSPST
IYIPQGSYLLKNAYFQGQKCKSKSITLRIDGTILAPSDYNVNRDEENWIKFERVDGISIY
GGTLDGQATSLWACKTSSNNCPQGTMGVTFSNSSNINIIGLTSQNSQMFHILVDNCENVK
LQGVKISAPGNSPNTDGIHVQYSSRVTIMNSRIGTGDDCISIGPGTSNLWIENIACGPGH
GISIGSLGWELQEPGVQNVTVKTVTFKGTQNGLRVKTWARSSYGFVKNILFQHIVMMNVQ
NPIIIDQNYCPNNENCPHQGSGVKISDIKYRDIRGTSATEVAVKFDCSKKYPCSGISLED
VNLSYKNQPAEASCANAGGRAFGFQKPNSCL
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcttagtcaaaaatctcccactctttttcacaatcttcttcttgctcttcaac
tcttccattgctatatataacatcaaaaactatggagcaaaatcgaatggcaaaatcgat
tcatcgacagcctttatgagtgcatgggatgcagcatgtgcatcaactagcccatccacc
atttacataccacaaggaagttacttgcttaaaaatgcatattttcaaggccaaaaatgc
aagagtaagtctattaccttacgtatcgatggcactattctagctccatcggattataat
gtcaatagagacgaagaaaattggatcaaatttgaacgagttgatggaatttccatctat
ggaggaaccttagatggacaagctactagtctttgggcttgcaaaacgtctagcaacaat
tgtcctcaaggaacaatgggagttacattttcgaactcaagcaacataaatatcattgga
ttaacatcacaaaatagccaaatgttccacatattggtagataattgtgaaaatgtgaag
ctacaaggagtaaagatctccgcgccaggaaacagtccaaacactgatggtattcacgtc
caatattcatctagagttacaataatgaactcacgtattggtactggagatgattgcatc
tcaattggccctggcacctctaacttatggattgaaaacatagcatgtgggcccggtcat
ggaataagcattgggagtttaggctgggaattacaagaacctggagtacaaaacgttacg
gttaaaaccgtaacgtttaaaggaacacaaaatggattgagagtaaaaacatgggcaaga
tcaagctatggatttgtcaaaaatattcttttccaacatattgttatgatgaatgttcaa
aaccctattattattgatcaaaattattgccctaacaatgaaaattgtcctcaccaaggc
tcgggtgtaaagatcagtgacataaagtatcgagacatacgtggaacatcagcgacggaa
gttgcggtgaaatttgattgtagcaaaaaatatccatgtagtgggatatcactagaagat
gtaaatcttagctataaaaatcaaccagctgaagcttcttgtgctaatgctggaggaaga
gcttttggttttcaaaaaccaaatagttgcttatag
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