Solanum pennellii: 107006864
Help
Entry
107006864 CDS
T04130
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107006864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107006864
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107006864
mRNA degradation factors
5'-3' decay
Lsm complex
107006864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
107006864
NCBI-ProteinID:
XP_015060869
LinkDB
All DBs
Position
12:2730836..2733222
Genome browser
AA seq
129 aa
AA seq
DB search
MSNWSDSNDYLFSSSLASYLDGKIIILLRDGRELLGTLRSFDQYANIVLEGTKERVIVGN
LYCDISLGLYIVRGENVMLIGQRESDEEELPPHMTCVSEIEIKRVQKADKNAEELKGSTR
RRMEFIDFD
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgtctaattggtcagattcaaatgactacttgttctcatcaagccttgcaagctatctt
gatggaaaaattattatattactgcgagatggtagagaactcttgggaactttacgttct
ttcgatcagtatgcaaatatagtattggaaggtactaaagaaagagtaatagtgggaaat
ctctattgtgacatatctttgggtctctacattgttcgtggggagaatgttatgctcatt
ggacaacgggagtctgacgaggaggagctccccccacacatgacatgtgtttcagaaata
gaaatcaaaagggttcaaaaggcagacaagaatgcagaagaactaaagggttccactaga
agaagaatggagtttattgactttgactag
DBGET
integrated database retrieval system