Solanum pennellii: 107006877
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Entry
107006877 CDS
T04130
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
spen
Solanum pennellii
Pathway
spen03020
RNA polymerase
spen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107006877
09124 Replication and repair
03420 Nucleotide excision repair
107006877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107006877
03400 DNA repair and recombination proteins [BR:
spen03400
]
107006877
Enzymes [BR:
spen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107006877
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107006877
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107006877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
107006877
NCBI-ProteinID:
XP_027769270
LinkDB
All DBs
Position
12:4182068..4189333
Genome browser
AA seq
1205 aa
AA seq
DB search
MMYGDNEYVDDRDMMQVEDEGGEGRGDVDEDEDEDESREITQDDAWAVISSYFEEKGLVR
QQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQPDFVETIYKIKFTQIYLSRPMMT
ESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIM
LRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSSNHVYVFKKRQPNK
YAYVAEVRSISEGQNKAPSGMFVRMLSRSNSKGAYGQYIRATLPYIRTEIPIIVVFRALG
FVADKDILAHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGFTREKRIK
YAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAG
PLLGGLFRMLFRKLTRDVRSYVQKCVDGGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN
AAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQ
ACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHR
NPDLLVRTLRQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVDKKRLRIKKND
IIALQMRESSEDSGWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRVNPDEAYAETYT
HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
QKPLVTTRAMEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
RDEEKKMGTLVKEDFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTTPIS
QDEAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFS
SRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGKE
GDATPFADVTVDSISRTLHNCGYQMRGFERMYNGHTGRVLTAMIFLGPTYYQRLKHMVDD
KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVH
VCQQCGLMAIANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKELK
PSNRK
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgatgtatggagataatgaatatgttgatgatagagatatgatgcaagtagaagacgaa
ggaggagaaggaaggggtgatgttgatgaagatgaagatgaagatgagtcacgggagata
actcaggacgatgcatgggctgttattagttcatattttgaagaaaaaggacttgtgagg
caacaattggattcgtttgatgagtttatacagaatacaatgcaggaaattgttgatgaa
actgctgatattgaaattcgacctgaatctcagcataatcctagtcgtcaacctgatttc
gttgagacaatctacaagatcaagtttactcagatatacttgagtagacctatgatgaca
gagtctgatggagagactaatactttgtttccaaaggctgcaaggttaagaaacttaaca
tactcttccccgctatatgttgatgtgaagaaggaagtaataaagaaaggtcatgactat
gaagaagtgacagaaaatcaggaatttaccaaagttttcattggaaaggttcctataatg
cttcggtcaagctactgcagcttgtataacctatcggagaaagatttaacagagttggga
gagtgcccgtatgatcaaggtggatacttcatagtcaatgggagtgagaaagttctgatt
gcacaggaaaaaatgagcagtaatcatgtttatgtattcaagaaaagacaaccaaacaag
tatgcttatgtggcagaagttcggtctatatccgagggccaaaacaaggcacctagtggc
atgtttgttaggatgctttctaggtctaattctaagggggcgtatggccagtatattcgt
gccactcttccatacatacggactgaaattccaattatagtagtcttcagggcattagga
tttgtcgctgacaaggatatattggcgcatatttgttatgattttgctgacactcagatg
atggaattacttcgcccttccttggaagaagctttcgtgattcaaaatcagcaggtggca
cttgactatattggcaaaagaggatctactgttggtttcacaagagaaaagagaatcaag
tatgccaaagagattcttcaaagagaaatgcttccgcatgttggtactagagaatattgt
gaaactaagaaagcctactattttggctacatcatccatcgtcttttactctgtgtattg
ggacggaggcctgaagatgatagggatcattatgctaacaaaagactggatcttgctggc
cctttacttggtggcttattccgaatgctattcaggaagctaacaagggatgtgagatcc
tatgttcaaaagtgtgttgacggtggaaaggatgtgaatttgcaatttgccattaaagca
aaaacaattacaagtggacttaagtattctcttgctactgggaactggggacaagcaaat
gctgctggtaccagggcaggagtttcacaggttttgaatcgtttgacatttgcatctact
ctttctcacttgcgtagattgaactcaccgatagggcgggagggtaaattggcaaaacct
agacagcttcataattctcactggggaatgatgtgtccagcagaaacgcccgaaggacaa
gcatgtggactggtaaagaaccttgctttaatggtgtatataacagtaggatcagcagca
aatccaattttggagtttctagaagagtggagtacagaaaattttgaggaaatatctcct
gcggttattccccaatctaccaagatttttgtaaatggttgttgggttggcattcatcgt
aatccagatctgttggttaggacactgagacagctgaggagacaggttgatgttaatact
gaagttggagttgtccgaaatataaatctgaaggaactgcgcctgtatacagattatgga
cgttgtagtaggccgttattcatagtggataaaaagagattgaggataaagaagaatgat
attatcgcactgcaaatgagggagtcatctgaagattctggctggcatgatcttgtggcg
aaaggatttattgagtatgttgatactgaggaggaagagactacaatgatcgcaatgacc
ataaatgatcttacaaattcaagggtgaacccagatgaggcttatgctgagacctacaca
cactgtgaaatccatccatctttgatattgggagtgtgcgcttcaatcataccgtttcca
gatcataaccagtcccctcgtaacacatatcaatccgctatgggaaagcaagcaatgggg
atttatgtcaccaattaccaatttcggatggatacattggcctatgtactgtattatcca
caaaagcctcttgttactacgcgagctatggagcatttgcatttcaggcagcttccagct
ggcattaatgccattgttgccattacctgttattctggttataaccaagaagattctgtc
atcatgaatcaatcttcaattgaccgtggcttcttccgctctctatttttccgttcatat
agggatgaagagaaaaagatgggaacgcttgttaaagaggattttgggcgtcctgataga
gaacataccatgggaatgcgacatggaaattacgataaattagaagatgatggatttgca
cctcctggaacaagagtttctggtgatgatgtcataattggaaagaccacacctatttct
caagatgaggctcaaggacaatctgcaagatacacgcgcaaagaccacagtaccagtcta
cgacatagtgaaactggaattgtggatcaggttcttttgacaacaaatgcagatggattg
agatttgtcaaaataaggatgagatctgtcagaattccacagattggagacaaattcagc
agccggcatggacaaaaaggaaccattggaatgacttatacacaagaagacatgccatgg
tccgctgaaggcatcaccccagatatcattgtgaatcctcatgctatcccttctcgtatg
acaataggtcagctagttgagtgcatcatggggaaggttgctgctcacattggaaaggaa
ggagatgctaccccttttgctgatgttactgtggatagtatcagcagaactctacacaat
tgtggctatcagatgcgtggttttgagagaatgtataatggtcatacaggtcgtgtactg
actgcaatgatattcttggggccaacttactaccagagactgaagcacatggtggatgat
aagattcattctcgtggccgtggtcctgtgcagattctcactagacagcctgctgaaggg
agatctcgtgatggaggactacgatttggggagatggaacgtgactgtatgatagctcat
ggcgctgcacacttccttaaagagagactgtttgatcaaagtgatgcttacagagttcac
gtatgccagcaatgtggtttaatggctattgcaaatctgaaaaagatgtcattcgagtgc
agatcttgtaggaataaaactgacaatgttcaggtgtatattccctatgcctgcaagctt
ctgattcaagagctcatgtcaatggcaattgccccaagaatgcttactaaggaattgaaa
ccatcaaatcgaaagtaa
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integrated database retrieval system
