Solanum pennellii: 107006897
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Entry
107006897 CDS
T04130
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Module
spen_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107006897
Enzymes [BR:
spen01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107006897
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
107006897
NCBI-ProteinID:
XP_015060896
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Position
12:complement(10515790..10517544)
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AA seq
396 aa
AA seq
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MYDFKTMKFTSVFCLLFFCLNILIIPSCLAYNVVNFGARGDGRTDSTSAFLRAWSSACHS
TSQPNVYIPRGTYLVRTLNLNGPCKRRVEFRIDGTLVAPVNYNAIGNAEFWIMFYKVSGL
NVYGGTINAKGHGYWSCRKGGGTCPQGARSIQFMWCNNVLLKGLTSLDSQRVHIGIGYSS
NVRVENLKITAPSGSPNTDGIHVQNSRGITIYDSIIKTGDDCISIGPASANMWIEKVGCG
PGHGISIGSLGHSLNEDGVANITVANSVFTKTQNGVRIKSWARPSGGFAKNIMFRNLVMR
NVGNPIFIDQNYCPHNVCPRQSSGVKVRDVTFKNVKGTSSTQAAMKFDCSASNPCTGIKL
HNINLTYNDRLRRPAFAYCKNARGSHVGKVFPKSCI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacttcaaaaccatgaaatttactagtgttttttgtttactcttcttttgttta
aatatactaattataccttcttgtttagcttacaatgtggttaattttggggctagggga
gatggcaggacagactcaacctccgcttttcttcgcgcttggtcttctgcctgccactct
actagccaacctaacgtgtatattccacgaggaacgtatttggtaaggacgttgaactta
aatggaccttgtaagagacgagttgagttccgaattgatggtactctcgttgctccggtg
aattataatgcaattggaaatgctgagttttggattatgttttataaggtaagtggtctt
aatgtgtatggtggaactattaatgcaaagggacatggttattggtcttgtagaaaaggt
ggaggtacttgtccacaaggagctaggtcgatacaatttatgtggtgtaacaatgtactg
ttgaagggtttgacatcactagacagtcaaagagtacacataggaattggttacagtagc
aatgtcagagttgagaatcttaagataacagctccaagtggaagtccaaacaccgacgga
attcatgttcagaactcaagggggattactatttatgacagcattatcaagactggagat
gattgtatatctattggccctgcctccgcgaatatgtggattgaaaaagttgggtgtggc
cctggacatggtatcagcattggaagtttgggacatagtttgaatgaagatggagtagca
aatatcacagtagcaaattctgttttcacaaagacacaaaatggggttaggataaaatca
tgggcaagaccaagtggtggctttgctaaaaatatcatgtttagaaatcttgttatgagg
aatgttggaaatcccattttcattgaccaaaactattgccctcataatgtctgccctcgt
cagagttcgggagtgaaggtgagagacgtaacattcaagaatgtgaagggaacatcatct
acacaagcagccatgaaatttgattgtagtgcttcaaatccgtgcaccggaataaaatta
cataacattaacttaacttacaatgatcgtttgagaaggccagcctttgcttactgtaaa
aatgcaaggggaagtcatgttggcaaagtgtttcccaaaagttgcatatga
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