Solanum pennellii: 107007221
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Entry
107007221 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107007221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007221
03041 Spliceosome [BR:
spen03041
]
107007221
03009 Ribosome biogenesis [BR:
spen03009
]
107007221
03016 Transfer RNA biogenesis [BR:
spen03016
]
107007221
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107007221
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107007221
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107007221
Complex C
U4/U6.U5 tri-SnRNP related factors
107007221
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Helicases
107007221
Transfer RNA biogenesis [BR:
spen03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107007221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
107007221
NCBI-ProteinID:
XP_015061234
LinkDB
All DBs
Position
1:complement(102263578..102271721)
Genome browser
AA seq
991 aa
AA seq
DB search
MGSFKRKSQEFSNEDDIPPSKQLKQNDLLGADEPVTCLHDVSYPEGYVPSASTSGLPQQD
SKPAKEFPFPLDPFQSEAINCINNGESVMVSAHTSAGKTVVALYAIALSLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSNFVFLSATVPNAKEFADWVAKVHQKPCHIVYT
DYRPTPLQHYIFPSGGDGLYLVVDDKGKFREDSFQKALNALVPANEGDKKRENSKWQKGL
VVGKSGENSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMSKMDLNNDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGICILMVDEKL
EPSTAKFMLKGSADALNSAFHLSYNMLLNQIRSEDGHPENLLRNSFYQFQADRALPDLEK
QAKILEEERNSIVIEEEDSLERYYNLLEQYKSLKRDVRGIVFSPKYCLPFLQPGRLVCIE
CTKVDVDPNFSLSEEVSWGVIVNFERVKGISEDDANKKPEDANYTVDVLTRCIVQKDEVG
RKTIKVVRLKDAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRENTLKKVSEVLNRFS
KEGMPLLHPEDDMKVQSSSYRKASSRIEALESLFEEYEIAKSPLIKEKLKVLHKKKELTS
KIKSIKRTLRTSTVLAFKDELKARKRALRRLGYIKDDVVLQKGKVASEISSADELTLTEL
MLNGTFRNIKVEDMVSLLSCFVWQEKLQDAQKPREELGLLFAQLQDTARQVAKVQLESKV
QIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEMTPVFEGSLIRAIRRLEEVLQQLIQAA
KSIGDIVLEAKFEEAVTKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttttaagaggaagtcgcaagaattctccaatgaggatgatattcctccaagt
aaacagctaaaacaaaatgatttacttggtgcggatgagccagtgacatgtctgcatgat
gtgtcatatccagaagggtatgttccctctgcttcaacttctggtttgcctcaacaagat
tcaaaacctgctaaagagttcccttttccactcgacccttttcaatctgaagcaatcaac
tgtattaataatggcgaatccgtcatggtatcagcacacacgtcagcgggaaagacagtt
gtggcattatatgcaattgccttgtcgttgaagaataaccagcgagtagtatatacttca
ccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagatgtg
ggtttgatgactggagatgtcacaattgatccaaatgcttcttgcctggtaatgactaca
gaaatctggcgtagtatgcagtacaaaggatcagaggttacaagggaggtggcttgggtt
atatttgatgaggtacactacatgcgtgatagagaaagaggtgtggtttgggaggaaagc
attgttatggccccaaaaaattctaactttgtcttcctctcagccacggtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagaaaccatgtcacattgtttataca
gactatagacccacaccacttcagcattatatatttccttctggtggtgatgggttatac
ttggtggttgatgataaagggaagtttcgtgaggatagttttcagaaagctttgaatgct
cttgttccagccaatgaaggggataaaaaaagagaaaatagcaagtggcagaagggtctg
gttgttggcaaatctggtgagaatagtgacatattcaagatggttaaaatgattatccag
cggcaatacgatcctgtaatatgcttcagcttcagcaaaagagaatgtgaatttctagca
atgcagatgtctaaaatggatttaaacaatgatgatgagaaggtgaatattgaaactatt
ttctggagtgccatggacatgttgtcggatgatgataaaaagctgcctcaggtttcaaat
atgctacctctattgaaacgtggaattggtgtgcatcattctggtttgctccctatattg
aaagaagtgattgaaatcctgttccaagaagggttcatcaagtgtttgtttgccacagag
actttcagtatagggttgaacatgcctgcaaaaactgttgtctttacaaatgtccgtaaa
tttgacggagacaagtttaggtggttatccagtggtgagtatattcagatgagtggtcgt
gctggccgtcgggggattgatgatcgtgggatctgcatccttatggttgatgagaaactt
gaaccttctacagctaaattcatgctaaaaggaagcgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacggtctgaagatggtcatcctgaaaat
ctgctgcgtaactcattttatcaatttcaagcagatcgtgcacttcctgatcttgagaaa
caagcaaagattcttgaagaggagagaaactcaattgttattgaagaagaagacagcctt
gagagatattataatctgctagaacaatataagagcttgaagagggatgtacgtggcatt
gttttttctccaaaatattgcttacctttcctgcagcctggtaggcttgtatgcattgag
tgtacaaaggttgatgttgacccaaacttctccctcagtgaagaggtctcatggggagta
atagttaattttgaaagagtgaaagggatttctgaagatgatgcaaacaaaaaaccggag
gacgcgaactatacagtagatgtactcacgagatgtatagtgcagaaggatgaggttggt
agaaagacaattaaagtcgttcggttgaaggatgctggtgaaccagctgttgtctctctt
cctttgtcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatcttttg
ccttcagaagttcgagaaaatacactaaagaaggtttctgaagttctcaatagattttca
aaagagggcatgcctctcttacacccagaagatgacatgaaggttcaaagtagctcgtac
aggaaggcttcgagtaggatagaggctcttgagagtctgtttgaagagtatgagatagca
aagtctccccttataaaagagaagcttaaggttttgcataagaagaaagaacttaccagc
aaaatcaaatcaatcaagagaacattgcgtacttcaactgtcttagctttcaaagatgaa
cttaaagcacggaaaagagctcttagaagacttggatacatcaaggatgatgttgtgttg
cagaaaggaaaagtagccagcgaaatcagcagtgcagatgagttgaccttgactgaattg
atgttgaatgggaccttcagaaatattaaagtggaggatatggtctctcttctctcttgt
tttgtttggcaagaaaagcttcaggatgctcaaaagccccgggaagagcttgggttgctc
tttgcacaattacaggatacagctcggcaagtggcaaaagttcagctcgagagcaaggtc
caaatagatgttgagaacttcgtgagttctttccgacctgatatcatggaggccgtctat
gcttgggctaaaggatctaagttttatgagattatggaaatgactccggtgtttgaaggc
agtttaatcagggctatcaggagattggaggaagttcttcagcagctaatacaagctgca
aaatccattggggatatcgtgcttgaggcaaaatttgaagaggctgttaccaagatcaag
agggatattgtctttgctgcatctctatatttgtag
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