Solanum pennellii: 107007279
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Entry
107007279 CDS
T04130
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107007279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007279
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107007279
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107007279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
107007279
NCBI-ProteinID:
XP_015061321
LinkDB
All DBs
Position
12:13194856..13226977
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AA seq
848 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKQRPPRLVHLETSIARHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSTLPLDKVES
LEDLVTVVPPALVKGVTVPSAVLSVKTSLASPPAQASVAVTSLAQQAASVQDQSDEVASQ
DSSSEIVVRTPPPKSSAVATSAPTTPAGSHATQGAAALSPTSMSNAIKEDDLTSFPARKP
SPALSETALRGVSRGALSNQPVASIALGSTGSVTGNGGLGAIPSASEVTKRNILVSEERL
GSSGMGQPLVSPLANRMMMSQAVKATDGIGVADAANLGDATVMTGRVFSPSVGPGMQWRP
GSSFQNQNEAGQFRGRTEIAPDQREKFLQKFQQVQQGQGNLLGVPPFSGGNLKQFSSQQQ
NPLLPQFNSQSSSVTPQLGLGVGAQAVGINNIASSASLQQQPDVGHSKAEELQQQQILPE
DSSADPSVNAGLGKNLLNEDDMKASYGLDTPMQGGVAEASPRPRDTDLSPGQPLQSSQSS
GSLGVIGRRSVADLGAIGDSLSVTSANSSGMHDQIYNLQMLESAFHKLPLAKDSERAKSY
TPRHPAVTPSSYPQVQAPIVNNPGFWERLGADNYGTDTLFFAFYYQQNTYQQYLAAKELK
KQSWRYHRKYNTWFQRHEEPTVATDDFEQGTYVYFDFHIANDEQHGWCQRIKQEFTFEYN
FLEDELIV
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgaaagttacagggtgaaatagatcgagttctgaagaaagttcaggaa
ggcgttgatgtcttcgatagcatatggaacaaggtttatgatacggataatgctaaccag
aaggaaaaatttgaagcggatttgaaaaaggagattaaaaagcttcagaggtatagagac
caaatcaaaacatggattcaatcgagtgaaatcaaagataaaaaggtaagtgcatcatat
gagcaagcattgatggatgctcgtaagcttattgagcgtgaaatggaacgattcaaaata
tgtgagaaagaaactaagaccaaagcattttcaaaagaaggcttgggccaacagccaaag
acggacccaaaggagaaggctaagtcagagacaagagattggttgaataatgtggttggg
gagcttgaaagtcaaattgacaatttcgaggctgaactggaaggactctcagttaaaaaa
gggaagcagaggcccccaagattggtacatttggaaacatctattgctcggcacaaggct
catataatgaagttagagttaattttaagactactggataatgatgagttgagtcctgag
caagtcaacgatgtcaaggatttcctcgacgattatgtggaaagaaatcaggaggatttt
gatgaattcagtgatgttgatgagctctacagcactttaccactagataaggtggagtct
cttgaagatctggttaccgtcgttccacctgctcttgtcaagggtgtcactgttcccagt
gcggttttgagtgtgaaaacttctctggcctctccacctgctcaagcatcggtggctgta
acatctttagcacagcaagctgctagtgttcaggatcaatctgatgaagtagcatcacag
gacagtagctctgaaatagttgttagaaccccacctcctaaaagtagtgcagttgctact
tctgctcccacaacgcctgctgggagtcatgcaacccagggtgctgctgctttatctcca
actagtatgtcaaatgcaataaaagaagacgatctgacaagttttccagctcgaaagcct
tcccctgcccttagtgaaactgctttaagaggtgttagtagaggtgctctatctaaccaa
cccgtggctagtattgcacttggttctactggttcagttactggcaatggaggtctagga
gctattccatctgcttctgaagttacaaagagaaatatcttagtttcagaggagaggctt
ggaagtagcggcatgggacagcccttggtatccccactggctaacagaatgatgatgtca
caagcagtgaaggctacagatggaattggtgttgctgatgcggcaaatctcggtgatgct
acggtcatgactggtagagttttctctccttctgttggtcctggtatgcagtggaggcct
ggtagttcctttcagaatcaaaatgaagcgggacaattccgtggaagaactgaaattgca
cctgaccagagggagaagtttttgcaaaaatttcagcaagtacagcaaggtcagggtaat
cttcttggcgtacctccatttagtggtggaaaccttaagcagttctcgtcccagcaacag
aatccacttttgccacagttcaattctcaaagctcctctgtcactcctcaacttggactt
ggagttggggcccaagctgttggtattaacaacattgcctcatctgcatctttgcagcaa
caaccagatgtaggccactcaaaagctgaagagttgcagcaacaacagattttgcctgag
gattcttctgccgatccttctgtaaatgctgggctcgggaaaaatcttttgaatgaggat
gatatgaaggcttcatatggattagataccccaatgcagggaggggtcgctgaagcatcc
cctaggcctagggatacagatctatctcctgggcaacctttgcaatccagtcagtcatct
ggaagtcttggagttattggtcgaaggagtgttgctgacctcggagcaattggtgatagc
ctgagtgtgacctctgcaaattcttcaggaatgcatgaccagatatacaacttgcagatg
cttgaatctgcctttcacaaacttcctctggccaaagattctgaacgagcaaagagctac
acaccgaggcaccctgcagttaccccttcaagctatccccaagtacaggctcccattgtc
aacaatcctggcttctgggaaagacttggagctgataactatggcacagacactctgttc
tttgcattttactaccaacagaatacttatcagcagtacctggctgcgaaggagttgaag
aaacagtcttggaggtatcacagaaagtataacacatggtttcagcgacatgaggagcca
actgttgccactgatgactttgaacagggaacatatgtctactttgatttccacatagcc
aatgatgaacaacatggatggtgccagaggatcaagcaggagttcacatttgagtacaat
tttcttgaagatgagctcattgtatag
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