Solanum pennellii: 107007352
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Entry
107007352 CDS
T04130
Name
(RefSeq) protein PAT1 homolog 2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107007352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007352
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107007352
mRNA degradation factors
5'-3' decay
Decapping complex
107007352
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NCBI-GeneID:
107007352
NCBI-ProteinID:
XP_015061428
UniProt:
A0ABM1FTC3
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Position
12:complement(990147..996452)
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AA seq
817 aa
AA seq
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MERSDCKDFMDLSNSSSSISDNALFDASQYAFFGRDPGEEVELGGLEEEGNNCVPAVDGG
FGDVDTHEYHLFEKDEGSALGSLSDIDDLATTFSKLNRNVAGPRHPGIIGDRGSGSFSRE
SSSAAEWAKETDFPDCFDQHLSDTECYQDSKRWSSQSHFSPLHLSESKPLYRTSSNPEQP
QQLQRFSSEPILVAKSSFTSLPPPAGRSLQASPYSLSHHQSMPSLAAGPQSHYSNANLST
LSNSNIHLPGLSHGLHYGGNMPQWTLPSLSLDTRLQNHWTSHASLSHGDHSRLLNSLSPH
QFPRNGLLSPLLISSQQLQQQRLHHSVQPSLAHFSALPSQFNSFPSPAHLGKHGLDDFRD
SKSKSSHKGRHNVRFSKLSSEGSSQKSENNVPKFRSKYMTGDEIESILKMQHPATHCNDP
YADDYYYQARLAKKATESRSKHRFCPNKEQPSRSRNSTDSQPHLHVDAKGQILFSSIRRP
RPLLEYDPPGFVCNGSGDQKISEKSLEQEPVFAARITVEDGFYLLLEVDDINRLLQFSQP
QDGGVQLKRKRQILLEGMAASLQLVDPLGKSGSSAGLTPKDDIVFLWLVSLPKGRKLISR
YLQLLVPGSELVRIVCMAIFRHLRFLFGGFPPDLEAAETVTALAKTVSACTSRMDLNLLS
ACLAAVVCSSEQPPLRPLGSPAGDGASVILKSVLERATHLLTDPQTVSGLSMPNPALWQA
SFDAFFGLLTKYCLSKYDSIMQSLMSPAQSNTELIGSEAARAVSREMPVELLRASLPHTN
EHQRKLLLNFAQRSMPVTGFNAHGVSSGQINPESVSC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgattgcaaagatttcatggacttgtctaactcttcgagctccatctca
gataatgctctcttcgatgcatcacaatatgcattttttggtcgagatccaggagaggaa
gttgaattgggtggtctagaggaagaaggaaacaattgtgttcccgcggtggatggtgga
tttggtgatgtcgatacacatgagtaccatttgtttgaaaaagatgagggatcagctttg
gggtctttatctgacatagatgatctggcaactacattttcaaagttgaacagaaatgtc
gcaggacctaggcatccaggaattattggtgatcgtggatcaggatcgttttcgagggaa
agttcatcggcagctgaatgggcaaaggaaactgattttcctgattgttttgatcagcat
ttgtctgacactgaatgttaccaggacagcaaaagatggtcttctcagtctcatttctct
cctctgcatctgtcagagtcaaaaccgttgtatagaacatcctcaaatcctgagcaacca
caacaacttcagcgcttctcaagcgaacccattttagtggcaaagtcatctttcacttct
ctccctcctccggctggcagatctctacaagcctcaccatacagtctatcacatcatcaa
agcatgccatctcttgctgctggacctcagtctcactattcaaatgccaatctctccact
ttgtcgaattctaatatccatttaccaggcttgtctcatgggcttcattatggtggaaac
atgccacaatggacacttcccagtctttctctcgatacccgtctacaaaatcactggact
agtcatgcgagtctcagccatggggatcattctagactattaaatagtttatctccacat
caatttcctcggaatggtttgttatctcctctgttaatctcttcccagcaactgcagcag
caaagattgcatcattcagttcaaccatctttagctcatttttctgcactgccttcccag
tttaattcctttccttctcctgcccacctgggtaagcatggattggatgattttagagat
tcaaaatctaagtcatcacataaaggtagacacaatgtgcgcttttctaaactaagctct
gaaggcagtagccaaaaaagtgagaataatgttcccaagttcagatctaagtacatgact
ggtgatgaaatagagagcatcctgaaaatgcagcatcctgcaacacattgcaatgatcca
tatgcggacgactattattaccaagctcgccttgcaaagaaagcaactgagtcgaggtca
aaacatcgtttttgtccaaacaaggagcaaccttcacgatcacgcaacagtacagactca
cagcctcacctccatgttgatgctaaggggcaaattttattttcttccatccgcaggcct
cgtcctcttcttgagtatgatccaccaggatttgtatgtaatggcagtggtgatcagaaa
atatctgagaaatctttggagcaggaaccagtgtttgctgctagaattacagtagaggat
ggtttttatcttctccttgaggttgatgacatcaataggctacttcagtttagtcagccg
caagatggtggtgttcagctgaagcggaagcggcagattctgttggaaggcatggctgcc
tcacttcagcttgttgatccgcttggaaaaagtggcagttcagctggtctgacccctaaa
gatgacattgtgttcttatggttggtgtctcttccaaaaggccggaaactcatttcaagg
tatcttcagcttcttgtacctggcagtgagcttgtaagaatagtttgcatggcaattttt
cgccatttaaggtttttgtttggcggctttccacctgatctagaagctgctgagactgtc
actgcacttgcaaaaaccgtctctgcatgtacaagtcgcatggaccttaatttgcttagt
gcttgtctagctgctgttgtttgttcctcagagcagccacctcttcgccctcttggaagc
cctgctggagatggagcctctgttattcttaaatctgttcttgaaagggcaactcatctc
ttgactgatcctcagactgttagcggcttgagcatgcctaaccctgccctttggcaggca
tcttttgatgccttctttggtttacttactaagtattgtttgagtaagtatgactctata
atgcaatcgctcatgtcaccagcccagtcaaacacagaactgattggttcagaagctgca
agagctgtaagcagagaaatgccagtggaactcttacgtgctagtctcccacacacgaat
gagcaccagaggaagctgttgttgaattttgctcagaggtccatgcctgtaactggattc
aatgctcatggtgtaagcagtggacaaataaatcctgaatctgtaagctgttag
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