Solanum pennellii: 107007367
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Entry
107007367 CDS
T04130
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3-like
KO
K14948
polypyrimidine tract-binding protein 2
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107007367
Spliceosome [BR:
spen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107007367
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
107007367
NCBI-ProteinID:
XP_015061447
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All DBs
Position
12:12516254..12524202
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AA seq
441 aa
AA seq
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MSDPSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVKALQF
YSNVQPSIRGRNVYVQFSSHQELTTMDQNAQGRGDEPNRILLVTIHHMLYPITVDVLHQV
FSPHGFVEKIVTFQKSAGFQALIQYQVQQSSVSARNSLQGRNIYDGCCQLDIQFSNLDEL
QVNYNNERSRDFTNPNLPSEQKGKSSQQGYGDMYSFQGSGVHPGGFPQMGNAEAIAAAFA
GGLPPGISGTNDRCTILVSNLNSDRINEDKLFNLCSLYGNIVSIKILRNKPDHALVQLGD
GFQAELAVHFLKGAVLFEKRLEVNFSKYPNITTGPDTHDYSNSNLNRFNRNAAKNYRYCC
SPTKMIHLSSLPQDVTEAEIIAHLEEHGPIVNSKLFEMNGKQQALVLFEKEEQATEALVC
KNATSLGSSTIRISFSQLQSI
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatccttcaaaggtcgttcatgttcgcaatgtggggcatgagatctcggagaat
gacttgcttcaactattccaaccatttggcgtcattacaaaacttgtaatgctcagggcg
aaaaatcaggccctcttgcaaatgcaagatgtcccttcagctgtaaaggcattgcagttc
tactcaaatgttcaacccagcataagggggaggaatgtttacgttcaattctcatctcac
caagaattgacaactatggatcaaaatgctcaaggccgtggagatgagcctaatcgaatt
ctcttagtcacaatacatcacatgctataccctataaccgtggatgtgctgcatcaagtg
ttttctccacatggatttgtagagaagattgtcacatttcagaagtcggctggttttcaa
gctttgatccagtatcaagtacaacagagttctgtttctgcaaggaactcacttcagggg
cgtaatatatatgatggctgctgtcagcttgacatacagttctctaacctagatgaattg
caagtgaactacaataatgaacgttcaagggacttcactaacccaaatctaccatcagaa
cagaagggcaaatcctctcaacaaggatatggagacatgtattccttccaaggttctgga
gttcatccaggtggatttcctcagatgggaaatgcagaagcaattgcagctgcgtttgct
ggtggtctgccacctggaattagcgggacaaatgacagatgcactattcttgtttctaat
ttaaattcagatagaataaatgaggacaaactttttaatctgtgctctctttatggaaat
attgtcagcattaagattctgcgcaataaaccagatcatgccttagttcagctgggtgat
gggttccaggcggagctggctgttcactttttgaagggtgccgttttatttgaaaagcgt
ctggaagtcaacttctcgaagtatcccaatattactaccggaccggacacacatgactac
tcaaattcaaatctaaaccgctttaaccgtaatgctgctaaaaactataggtactgctgc
tcccctaccaagatgatccacctatcctccttaccccaggatgtaacggaggcagagatt
atcgcacatttggaggagcatggtcccatagtcaatagtaagctttttgagatgaacggc
aaacagcaggctcttgttctttttgaaaaggaggagcaggcaactgaggcactcgtatgc
aaaaatgctacatctcttggtagctcaaccatccggatttcgttttctcagttacagagc
atctga
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