Solanum pennellii: 107007377
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Entry
107007377 CDS
T04130
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107007377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007377
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107007377
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
107007377
NCBI-ProteinID:
XP_015061461
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Position
12:831016..837318
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AA seq
475 aa
AA seq
DB search
MQVDLGKLFVGGISWDTDDERLKEYFSTFGEVVEAVIMKDRTTGRARGFGFVVFADPAAA
ERVVKEKHNIDGRMVEAKRAVPRDDQSTTSRSSPSIHGSPSPGPGRTRKIFVGGLASTVT
ETAFKQYFEQFGTITDAVVMYDHNTQRPRGFGFITYDSEDAVDKVLLKSYHELNDKMVEV
KRAVPKELSPGPSQSPLGRYSYGLNRMNNFLDGYAQGYSPNTVGGYGVGMDGRFSPITGG
RSVFTPFGSGYGMGLNFEPGLSPGYGGSANVNSSLSYGRGLNPYYSSSRLGGGIGFDGGS
GGGNTSFLNSANRSLWGDGGLHHGTTSTSSSNFLVSGTGGNIGGGSFSNSGVWGSSISSQ
GGGNVSSKNGNLGYVNGDSIYGMAGGYGRNVTKRGAAMPSGSRGSYDGGPLADLYGSGLG
YDDHTWRPSNSEQDATGSLGYGLGNGPSDMSPQSTSGYVGSYGVGNRQPNRGMDG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcaagttgatcttggtaagttattcgttggtgggatttcatgggacacagacgatgag
cgtctgaaggagtattttagtacttttggggaggttgtagaagctgtaattatgaaggat
aggactactggccgtgctcgtggtttcggttttgtggtctttgctgatcctgctgctgct
gagagggtagtaaaggagaaacacaacattgatggcaggatggtagaagcaaagagggca
gttccacgggatgaccagagcacgacaagtagaagcagtcctagtattcatggttctcct
agtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactgtcact
gagactgcctttaagcagtattttgagcaatttggaacaatcacagatgcagtagttatg
tatgatcataacactcaaaggcctaggggatttggattcatcacttatgattcagaggat
gcagtggataaagtcttgctcaagtcttaccatgagctgaatgataaaatggttgaggtc
aagcgtgctgtccccaaagagttatccccaggtcctagccaaagtccacttggtcggtac
agctatggattaaataggatgaataacttccttgatgggtatgcacagggatactctcca
aatacagttggaggatatggagtcggtatggatggtagatttagcccaatcactgggggt
aggagtgtctttactccatttggttctggttatggtatgggtcttaactttgaaccaggt
ctgagcccaggatatggtggtagtgcaaatgttaacagtagtttaagctatggacgggga
ctgaatccatattatagctcaagcagacttggtggtggcattgggtttgacggaggaagt
gggggaggaaacacttctttcttaaattcagcaaatcgcagtttatggggtgatggagga
ctgcaccatgggacgacctcgacaagctctagcaactttttagtatctggaactggtgga
aacattggaggaggaagctttagcaacagtggagtttggggttcatcaatttcctctcaa
ggcgggggaaatgtttctagcaaaaatggaaatctcggatatgtgaatggtgacagcata
tatgggatggcaggaggctatggcagaaacgtcactaaacgtggagccgctatgccatca
ggatccaggggtagttatgatggggggcctttagctgatttatatggtagtggtttggga
tatgatgatcacacttggcgtccctcaaattctgagcaggatgcaaccggttctcttggt
tatggactaggcaatggaccttctgacatgtcacctcaaagtacttcaggttatgttggt
agttatggagttggcaatagacaaccaaacagaggaatggacggctag
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