Solanum pennellii: 107007398
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Entry
107007398 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107007398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107007398
03009 Ribosome biogenesis [BR:
spen03009
]
107007398
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107007398
Spliceosome [BR:
spen03041
]
Complex A
U1 snRNP components
U1 related factors
107007398
Complex B
107007398
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Helicases
107007398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107007398
NCBI-ProteinID:
XP_015061496
LinkDB
All DBs
Position
12:complement(59884160..59891524)
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AA seq
501 aa
AA seq
DB search
MSRYDSRPADPGSYRDRRSDSGFGGGSNYRSSSSSRRDSEGKESPRKVNLDDLPPFEKNF
YVESPSIAAMTEGEVEEYRRRREITIEGRDVPKPIKSFHDVGFPDYVLQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIVHVNAQPILDHGDGPIVLVLAPTRE
LAVQIQEEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLFNAY
KVIIGSADLKANHAIRQHVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQ
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPG
SLEDYVHRIGRTGRAGASGTAYTFFTAANARFAKDLVNILEEAGQKVSPELAKMGRGAPP
PPGHGGFRDRGRGYGGNKQWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctatgatagccgtccggcggaccctggctcttaccgtgaccgtcgcagtgat
tcaggcttcggtgggggctcaaattataggtcatcatcatcgagcaggagagattccgag
ggtaaggagtcgccacggaaggttaatttggatgatttgcctccatttgagaagaatttc
tatgttgaatcaccatccatagcagcaatgactgaaggtgaggtggaagagtatagacga
cgacgggagatcactattgagggccgtgatgtgcccaagcctataaagtcctttcatgac
gtaggatttccagattatgtcttgcaagaaatcgaaaaagctggcttcactgaacctaca
cctattcaagctcaaggttggcctatggccttgaagggtcgtgatctcattggcatagca
gaaacagggtctgggaagacaattgcttatctgttgcctgcaattgtgcacgttaatgcc
cagcccattttagatcatggagatggtccaattgtcttagtgttagccccaactcgtgaa
cttgctgttcagattcaggaagaagctactaagtttggtgcatcatcgcggattaagaat
acctgcatttatggtggggttccaaaagggccccaagttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggaaggttgattgatatgttagaatctaatcatacaaac
cttcgaagagtgacatatctcgtgctggatgaggctgaccgcatgctagacatgggtttt
gaacctcagatccgcaaaattgtttctcagatacgcccagatcgtcaaacgctgtattgg
agtgccacatggcccaaagaagttgagcagcttgcaagacaattccttttcaacgcatac
aaagtaattattggttcagctgacctgaaagctaatcatgctattcgtcagcatgtggaa
atcgtctcggagagccagaagtataataaattagtaaagttgctggaagatattatggat
ggtagtcggattttaatattcatggacactaaaaaggggtgtgaccaagtaactcggcag
ctccggatggatggttggcctgcactttctattcatggtgataagagtcaagcagaaaga
gattgggtcctttcagaattcaaagctggaaagtctcctataatgacagctacagacgtt
gctgctcgaggtctagatgtgaaggatgtaaagtttgtaatcaactatgattttcctgga
tcattggaggactatgttcaccgaattggtagaacgggaagagctggtgcctcagggaca
gcatacacattctttactgcagcgaatgctaggtttgcgaaggaccttgttaacattctt
gaggaggccggacagaaagtcagtcctgaattggcaaaaatgggacgtggtgctcctccc
cctcctggtcacggagggtttcgagaccgtggaaggggttatggaggcaataagcagtgg
agctag
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