Solanum pennellii: 107007506
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Entry
107007506 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107007506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007506
03041 Spliceosome [BR:
spen03041
]
107007506
03009 Ribosome biogenesis [BR:
spen03009
]
107007506
03016 Transfer RNA biogenesis [BR:
spen03016
]
107007506
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107007506
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107007506
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107007506
Complex C
U4/U6.U5 tri-SnRNP related factors
107007506
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Helicases
107007506
Transfer RNA biogenesis [BR:
spen03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107007506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
AAA_16
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
107007506
NCBI-ProteinID:
XP_015061638
LinkDB
All DBs
Position
12:complement(7965396..7979386)
Genome browser
AA seq
980 aa
AA seq
DB search
MVESPTLKRRLEEENEAESASKRSRTCLHEVAIPSCYGSSNDESLHGTLSNPVYDGKMAK
IYPFKLDPFQEISVACLERKESVLLSGHTSAGKTAVAEYAIAMSFRDKQKVIYTSPLKAL
SNQKYRELSEEFSDVGLLTGDVSISPNASCLVMTTEVLRAMLYGGSEVLKEVAWVIFDEI
HYMKHRERGVVWEESIIFLPPAIKMVFLSATMSNPMEFAEWICNIHKQPCHVVYTDFRPT
PLQHYAFPKGGSGLYLVVDDNDQFREDNFLKLQETFTKKKPGSSNANASGRSGKGGNASG
VSDIYKIVKMIMARKFQPVIIFSFSRIDCEKHAMCMTKLDFNTEEEKEAVEQVFHSAVVC
LSEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLIKALFATETFAMGLN
MPAKTVVFTSVKKWDGDAHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEKMEMDNLKD
MVSGKPDPLVSSFRLTYYSILNLLSRTEGQFTAEHVIKNSFHQFQYEKDLPDIGKRVSKL
EEEAALLDASGEAEVAGYYKLRLEIAQFEKKLMAEITRPERVLYFLLPGRLVKVREGGKD
WGWGVVVNVVKKPPAALGSLPATLSASCAAGYIVDTLLHCSLGSSENGSRPKPCPPRPGE
KCEMHVVPVQLPLISSLSKLRISVPSDLRPLEARQSIFLAVKELEKRFPEGLPKLNPVKD
MGIEDPEVVNMVNQIEELEKKFFSYQLHKSQNEHQLRSFQRKAEVNHEIQQLKSKMRESQ
LQKFRDELRNRSRVLKKLGHIDADGVVQLKGQAACLIETGDELLVTELMFNGTFNDLNHH
QVAALASCFIPGDRSEEKIQLRDELEKPLQQLQDSARRIAEIQHECKLEIDVDEYVVASV
QPFLMDVIYCWSMGASFAEVIQMTDIFEGSITRLARRLDEFLNQLKAAAHAVGEVDLENK
FGAASDSIRRGIMFANSLYL
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggtggagtctccgacattgaaacggagattagaggaggagaatgaagcagaatctgct
tcgaaaaggtcaagaacttgcttgcacgaggtagcaattcccagttgttacggttcaagc
aatgatgaatcacttcatggaaccctttcaaatcctgtttatgatggtaaaatggcgaaa
atttatccatttaagcttgacccatttcaggaaatctcagttgcgtgtttggagcgaaag
gaatcagttcttctatctggacatacttctgctggtaaaactgctgttgcagagtatgca
attgctatgtcttttagggataagcaaaaggtaatctatacttcacctttgaaagctttg
agtaatcagaaatacagggagttgagtgaggagttttctgatgtgggtttattgactgga
gatgtttcaatttcaccaaatgcgagttgtttggtaatgacgactgaagttctgagagct
atgctttatgggggttctgaggtattgaaagaggttgcttgggttatatttgatgaaata
cattacatgaaacatcgcgagagaggggttgtttgggaagagagtattatattcttgcca
ccagctattaagatggtttttctttcagcaacaatgtcaaatcctatggagtttgctgaa
tggatttgtaatattcataagcagccatgtcatgtggtttacactgattttcgacccacc
cctttgcagcattatgcgttccctaagggtggttctggattgtatctcgttgttgatgac
aatgaccagtttagggaagacaatttcttgaaattacaggaaactttcaccaagaagaag
ccagggagctccaatgcaaatgctagtggaagaagtggaaaaggtggcaatgcttctggt
gtgtctgacatctacaaaattgtcaagatgatcatggcacggaagtttcagcctgtcatt
atattcagttttagtagaatagattgtgaaaaacatgcaatgtgtatgaccaaacttgat
tttaatactgaagaggaaaaagaagctgtggagcaggtattccatagtgcagtggtgtgc
ttgagcgaggaagataggaacttgccagcaattgaattaatgttgccactgcttcagcga
gggattgctgttcaccactctggtttgcttcctgttatcaaggaacttgtggaacttctt
ttccaagaaggactaataaaggccctttttgccacggagacgtttgccatgggactaaat
atgcctgcaaaaacagtagtttttaccagtgtaaaaaaatgggatggtgatgctcatcgt
tacattggatctggtgagtatatacagatgagtggaagagcaggacgtcgtggcaaagat
gagcgcggtatttgcattatcatgattgatgagaagatggagatggataacctcaaggac
atggtttcgggcaaaccagatccattggtcagctcctttaggctgacttactactcaatt
ttgaatctattgagccgcactgaaggtcaatttaccgccgagcatgttatcaaaaactca
tttcaccagtttcagtatgagaaggatttacctgacatcgggaagagggtttccaagttg
gaagaagaagctgcattgcttgatgcctcaggagaagctgaggttgcaggatattataaa
ctaaggcttgagatagcccaatttgagaaaaaattgatggctgaaataacaaggcctgaa
agggttctgtattttcttcttcctggtaggctggttaaggtacgcgaaggtggaaaggat
tggggttggggtgttgtagtcaatgtggtgaagaagcctccagcagcattgggttctttg
cctgctaccctctctgcttcatgtgctgctggctatattgtggatacattacttcactgc
tctctgggttccagtgaaaatggttctcgaccaaaaccatgccctcctcgtcccggagaa
aagtgtgaaatgcatgttgttcctgttcagttacccttaatttcttctctcagcaagctt
agaatatctgttccttctgatcttcgtcctttggaagcaagacagagtatttttcttgca
gtaaaggagcttgaaaaacggttccctgaaggcctcccaaagctcaaccctgtaaaggac
atgggcattgaagatcctgaagttgttaatatggtgaaccagattgaagaacttgagaag
aagttcttttcttatcaactgcataagtcacaaaatgaacatcagcttaggagtttccag
aggaaggctgaagtgaaccatgagattcaacagctcaagtcaaaaatgcgtgaatcacag
cttcaaaaatttcgggatgaacttaggaaccgctcccgagtcctcaaaaagctgggtcac
attgacgctgacggtgttgtgcagttgaaggggcaggcagcctgcttgatagaaactgga
gatgaacttctcgtaactgaattgatgtttaatggtacattcaatgatcttaatcatcat
caagttgcggctctggcaagctgctttatcccaggtgatagatcagaggagaaaatacaa
ttaagagatgagcttgaaaaaccattgcaacagttacaagatagtgcaagaagaatagca
gagatacaacatgaatgcaagctggaaatagatgttgatgaatatgtggtggcatcagtt
caaccattcttaatggatgttatttactgttggtcaatgggtgcatcttttgcggaggtt
atacaaatgacagatatctttgaaggtagcatcacacggctggctagaaggcttgatgaa
tttttaaaccagttgaaagctgctgcacatgctgtgggagaagtagatttagagaacaaa
tttggtgcagcaagtgacagtattcggcgagggataatgtttgcaaattctctctacctg
tga
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