Solanum pennellii: 107007507
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Entry
107007507 CDS
T04130
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107007507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007507
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107007507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
107007507
NCBI-ProteinID:
XP_015061639
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Position
12:complement(6109153..6113965)
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AA seq
475 aa
AA seq
DB search
MMETDLGKLFIGGISWDTDEERLKEYFTSYGEVIEAVIMRDRNTGRARGFGFVVFANPAV
AERVVNEKHIIDGRTVEAKKAVPRDDQQIINRNNSSIHGSPGPGRTKKIFVGGLASTVTE
SDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDRALYKTYHDLNGKMIEVK
RAVPKELSPGPNRSPFNGFNYGLGRVNNFLNNYAQGYSLGSIGGYGVRMDGRFSPVASGR
TSFSQFSSPAYGMGVNLDPALSPTFAGASNFSNNLGYGRALNPYFTGNSSRYTTPIGYNT
GSNRGDSLLSSPTRNVWGNGGLNSSPGPGSSGSFLGSGTGGYGVFGNNGVNWGSSAVSAP
VGSASGYGGRNVGFRSGGSSYGLGSGGLARSNAAGGVPTSFAASGGAYEGSYGDVYCSGS
MYGDSTWQTVSSDMEGSNTFGYGLENPADDSAKDSENYIGNYSIANRQSNRGIAT
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacagatctcggtaagctatttattggtgggatatcttgggacacagatgaa
gaacgtcttaaagaatatttcacttcgtatggagaagtgattgaagctgtgatcatgaga
gatcgcaatactggtcgtgctcgtggttttggttttgttgtgtttgctaatcctgctgtt
gctgaaagagttgttaatgagaagcatatcattgatggaaggacggttgaggcaaagaag
gctgttccgagggatgaccaacaaataataaatagaaacaatagcagcattcacggatct
ccaggtcctggacgcacaaaaaagatatttgtaggaggtttagcatctacggttactgag
agtgacttcaagacatactttgatcagtttggtacaattacagatgttgtagtgatgtat
gaccacaacactcagaggccaagaggctttggatttataacttatgattcagaggatgca
gtggatagggcattgtataagacgtatcatgatctaaatggtaaaatgatcgaggtgaag
cgcgctgttcctaaagagctgtctccggggcctaacaggagccctttcaatggattcaac
tatggacttggtagagtaaataactttctcaacaactatgctcaagggtatagtttaggt
tcgattggaggatatggggtcaggatggatggtagatttagtccagttgccagcggacgt
acaagtttctctcagttttcttctcctgcttatggaatgggtgtcaatttggacccagct
ttgagccctacctttgcaggagcttccaattttagcaacaatcttggttatgggcgggct
ctgaacccgtatttcactggcaactcaagcagatacactacacccattggatataacaca
ggcagcaatagaggtgattctttgcttagctcaccaaccaggaatgtatggggaaatggt
ggtcttaacagttctccaggtcctggtagctccggttcatttttgggatccggaactggt
ggttatggggtctttgggaataatggtgtcaattggggctcatcggctgtttctgctcca
gttggtagtgcttctggatatggtggtcggaatgttgggttcaggagtgggggaagcagt
tatgggctgggatctggaggacttgcaagaagcaatgcagcaggtggtgtcccaacttca
tttgctgcatcaggtggtgcttatgaggggtcttatggagatgtatattgcagtggctcc
atgtatggtgattcaacatggcaaactgtgtcttctgatatggagggctctaatacattt
ggatatggacttgaaaatccagcagatgattcagcgaaagactctgaaaattatattgga
aattatagtattgcaaatagacaatcgaatagaggaatcgcgacatag
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