Solanum pennellii: 107007641
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Entry
107007641 CDS
T04130
Name
(RefSeq) ribosomal RNA small subunit methyltransferase NEP1
KO
K14568
rRNA small subunit pseudouridine methyltransferase Nep1 [EC:
2.1.1.260
]
Organism
spen
Solanum pennellii
Pathway
spen03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107007641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spen03009
]
107007641
Enzymes [BR:
spen01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.260 rRNA small subunit pseudouridine methyltransferase Nep1
107007641
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
90S particles
Other 90S particles
107007641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EMG1
Motif
Other DBs
NCBI-GeneID:
107007641
NCBI-ProteinID:
XP_015061820
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All DBs
Position
12:7392879..7402853
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AA seq
278 aa
AA seq
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MVRAYKVKGEKRKKKGENYDKEEEIEVPLEEEESTKRVKTEHSEADTEAAERVVDLLSGI
PVVATDQTNKPGVIFIIERASLEIAKIGKTYQLLNSDEHSNFLKKNGRNPSDYRPDIAHQ
AMLSILDSRVNKAGRLKALYVRTEKGVLFEVKPHVRIPRTFKRFSGIMLQLLQKLSITAV
GKREKLLRVIKNPVTQYLPIDCRKIGFSHSSEKLVDIQDYVNGVNNDMNLVFVVGAMAHG
KIDKDYVEDYLSISDYPLSAAYCISMITNAMERKWNIL
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgtgcatacaaagtaaaaggggagaagagaaaaaagaaaggagagaattatgat
aaagaagaagaaattgaggtacctttggaagaggaggaatcaacaaaaagagtgaagaca
gaacactctgaggcagacaccgaggcagctgaaagagttgtagatttactatctggcatt
cctgttgttgcaactgaccaaaccaataaacctggtgttattttcatcattgaaagagct
tctcttgaaattgctaaaattggaaagacgtaccaacttctgaattctgatgaacactcc
aactttctgaagaagaatggccggaacccttctgattatcggcctgatattgcgcatcag
gcaatgctttcaattttagatagccgagtaaataaagctgggcgactgaaagctttgtat
gtgaggactgagaaaggtgtcctttttgaagtaaaacctcatgttcgtatccctaggaca
tttaagagattttctggcatcatgttgcagctgctacaaaagctaagcataactgctgtt
ggtaagcgagagaaactgttgcgtgttataaaaaaccctgttacacagtacctacccatc
gactgtcggaagataggcttctctcatagttctgagaagctggtggatattcaggactat
gttaatggcgtcaacaatgacatgaaccttgtctttgtggttggggctatggcccatggg
aaaattgataaagattatgttgaagattatttatcaatttcagattatccattgagtgct
gcatactgcatatcaatgatcacgaatgccatggagcgcaaatggaatattttgtag
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