Solanum pennellii: 107007690
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Entry
107007690 CDS
T04130
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107007690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107007690
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107007690
Spliceosome [BR:
spen03041
]
Complex C
Other components
Step II factors
107007690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_19
AAA_22
SLFN-g3_helicase
nSTAND3
AAA_30
ABC_tran
Flavi_DEAD
PhoH
ResIII
T2SSE
AAA_16
AAA_14
AAA_23
AAA_29
Myosin_head
Motif
Other DBs
NCBI-GeneID:
107007690
NCBI-ProteinID:
XP_027769369
LinkDB
All DBs
Position
12:80034647..80040631
Genome browser
AA seq
920 aa
AA seq
DB search
MADKDRRSKSMESRRRKRTSSEEHSYAVAASSPWDIVAPSPVPIRASVSSSTSKYPAKNH
NFNAKSNFISEIGSRIDYSRTRKKIVGKNWEDHQLLRSGGFRGNKVETEFDDDEEEQKVI
LHVHDIKLPPFLDGRVVFTEQAELILPIKDAMSDMAVISRKGSALVREIHEKQKRDKSRQ
RFWELAGSKLGDILGVEKSVDETDADTVVVGEDGEVDFKGKARFSQHLSVGDFTKSKTIS
QQRQNLPIFSVQDELLQVVRENQVVVIIGETGSGKTTQLTQYFYEYGYTANGIIGCTQPR
RVAAMSVAKRVSEEMESELGDKVGYAIRFEDATGPSTVIKYMTDGVLLRETLKDPDLEKY
SMILMDEAHERSLDTDVLFGILKKVVARRRDFKLIVTSATLNGEKFSNFFGGVPIFNIPG
RTFRVQICHSKTPCEDYVEAAVKQAMTIHIAGAPGDILIFLTGQDEIEATCYALSERMEQ
LISSTKQPVPKLLILPIYSQLPADLQAKIFHKAEDGARKCIVATNIAETSLTIDGIFYVI
DTGYGKMKVYNPHMGMDALQVFPISRASADQRAGRAGRTGPGTCYRLYTESAYENEMLQS
PVPEIQRTNLGNVVLLLKSLKIQNLLDFDFMDPPPQDNILNSMYQLWLLGALNDVGDLTD
LGRKMVKFPLDPPLAKLLLMGEQLECLNEVLTIVSMLSVPSVFFRPKDREAESDAAREKF
FVPESDHLTLLNVYQQWKANEYRGDWCNDHFLQVKGLYKAREIRSQLLDILNTLKIPLTY
CGPDWDVVRKTICSTYFHNAAMLKGIEEYVNCRNKMPYNLHPTSALYGLGYTPDYVVYHE
AILTTKEYMQCVTAVEPHWLAELGPMFFSVGANVDVHTERGIEERHGIDDKVDALKSIIK
ISVSSSIRYHMVVEGSFNSQ
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaggatagaagaagcaaatccatggaatcgagaaggagaaagagaaccagt
agcgaagaacattcatatgctgttgctgcttcttctccatgggacattgtggctccttct
ccagttccaattagggcatcggtaagttcttcaacttctaagtatcctgcaaaaaatcac
aattttaatgctaaaagtaattttatatctgaaataggtagtagaatagattattcacga
actagaaaaaaaattgtcggtaaaaactgggaggatcatcaacttttgagatctggaggt
tttagaggtaacaaggtggagacggagtttgatgatgatgaagaggaacaaaaggtgatt
cttcatgttcatgatataaagctgcctccttttttggatgggagagttgttttcactgag
caagctgagctgatattgccaattaaggatgcaatgtccgatatggcagtaatttcacga
aaagggtcagctcttgttagggaaatacatgaaaaacaaaagagggataagtctaggcaa
agattttgggagctagctgggtcgaaactcggagatattctaggtgtggagaagagtgtt
gatgagactgatgcagatactgttgtagtgggtgaggatggtgaggttgattttaaggga
aaagccagattctcacagcatttatctgtcggtgattttacaaaatcgaaaacaatttca
cagcaacgacagaatttgcccatattctctgtgcaagatgagttattgcaagtggttcgt
gaaaatcaggtggtggttattataggagaaactggttctggaaaaacaacacagctaact
cagtacttctatgaatatggttatacagctaatgggatcataggttgcacccaacctaga
cgtgtggcagcgatgagtgttgccaaaagagttagtgaggaaatggaaagtgagctcggg
gataaagttggatatgctattcgtttcgaagatgccactgggccaagtactgttatcaag
tacatgaccgatggtgtgctcttaagggaaactcttaaggatcctgatcttgagaaatat
agtatgattttaatggatgaagcccatgagagatcacttgacactgatgtcctttttggc
attctgaagaaagttgtagctaggcggcgtgattttaagcttattgtcacttctgccact
ctcaatggagagaagttctcgaacttctttgggggtgtaccaatatttaacatacctgga
aggacttttcgagttcaaatatgtcatagtaaaaccccgtgtgaagactatgttgaagct
gcagttaagcaagccatgaccatccatattgctggtgcacctggtgatatactcatcttc
ttaactggtcaggatgagattgaagcaacctgttatgcactttcagagcggatggaacaa
cttatctcatcaacaaagcaaccagtacccaagttgttaattcttcctatatactctcaa
ctgcctgctgatctgcaagcaaaaattttccataaagctgaagatggggctcgcaaatgc
attgttgctactaatatcgctgagacgtccttgaccattgatggaattttctatgtcatt
gatacaggctatggtaaaatgaaggtgtacaatccccatatgggtatggatgctctgcaa
gtgttccccattagtcgagcttctgcagaccaacgtgctggtcgagctggtagaactggc
ccaggaacttgttaccgactttatacagagagtgcttatgagaatgaaatgctgcaaagc
cccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtctctc
aaaattcagaacttgttggattttgattttatggatccacctcctcaagataacatcctt
aactccatgtatcagttgtggttactaggtgcactgaatgatgttggtgatttaacggac
cttggacgaaaaatggtgaagttcccgttggaccctccccttgccaaattgctcctgatg
ggggaacaactagaatgcttaaacgaggttctgacaattgtttctatgctttcagtgcct
tcagttttctttcgacctaaggatagggaagcggaaagtgatgctgctagggaaaagttt
tttgtgccagaatctgatcaccttacattgcttaatgtttaccaacaatggaaagctaat
gaatacagaggagactggtgtaatgaccattttttacaggtcaaaggtctgtacaaggct
agggagataagatcccaattgttggacatcctcaacacgctcaaaattccactcacatac
tgtggtcctgattgggatgttgtgcggaaaacaatctgttccacatacttccataatgca
gctatgctgaaggggattgaggaatatgttaattgcaggaataaaatgccctataacctg
catcccacaagtgctctctatggattgggttacactcctgattacgtggtttatcatgag
gcaatcttgacgacaaaggagtacatgcagtgtgtgacagctgtggagcctcattggtta
gcagagttggggccaatgtttttctccgtgggagcaaatgttgatgtacacactgaacga
ggcatcgaggaacgtcatggcatcgatgataaagttgatgctctgaagagcataatcaag
atcagcgtcagtagttcaattaggtatcacatggtggtcgagggctcattcaacagtcaa
tag
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integrated database retrieval system
