Solanum pennellii: 107007780
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Entry
107007780 CDS
T04130
Name
(RefSeq) nuclear pore complex protein NUP160 isoform X1
KO
K14303
nuclear pore complex protein Nup160
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107007780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007780
03036 Chromosome and associated proteins [BR:
spen03036
]
107007780
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107007780
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107007780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
107007780
NCBI-ProteinID:
XP_015062035
UniProt:
A0ABM1FUW2
LinkDB
All DBs
Position
1:complement(101829177..101851906)
Genome browser
AA seq
1487 aa
AA seq
DB search
MGSQSCLAGMEVPIIGSDSVKFVQLSVPSSTSTSVSSPTPPTAGRDVGSCSIIGNPPAYF
TWKICRSHPNVLEVMEFCGHKEFPKTGLQIVFPEALFPFAVICKNEMALSSVKPYLLHAM
TVSGVAYLIKLENISNYVSSSHLQSGDFVDFNTLTNPHQGAATAVAGIAELMVVGRSDGS
VGFFQLGILDQRAPGFVQELRDDSGLGRLWGVLSRGRSNAAVQDLVISEFHQKKLLFVLH
SDGNLRVWDLSNRSRIFSHSLSVSPSAGSTFVRICVGNDHNNPDAIPMAVLQKDDSEVGT
AVISLYNLYLSTGDRINLLLDPSTKSISLEEGDLIDIKLTPNKLWILRENGLVMKELSCQ
NRNEELAHCYSLQDAFVAEQLFQGSENSSDDLLWLSHTVLSSSKDQISPFLSSVFLHRLL
LPGVYHRNVLRVTLRYFSKHFTDSEFDSLTVDGLRNEILSVIQHEVGADSPISVLQSWKT
FCTCYFNNWCRTNVACGLLIDSATQAVGVIRKNSVSMCRSLEDIELLVFASGSSGEHGNI
ICSRFDSSDSDLEREILFEILQCVNTLRQQLGKAAPAIFYESLLRTPSLSSEEVIPRLLK
NLESGYSSSMALHVSELGTDVALDKEISYHKSLRKFSVDMFLSLHNLCSRATTWRSVLHV
IESYLKFLVPRKYEHNLDSEGLFTVSTALTVQATSQVAKVMFESALDVHLLLSYMVNSSS
QIGMLEDEVSKVKLELVPMIQEVITEWHIINFFSTTPSESPLLEDFSSQLSSLQLDGNVD
RRSWNEKLGKSEFTLAFILLLGGHSGPSFGHLPDPNSLSKSVQEFASWIMWGRTEAEPSV
FFSHSIGLALVLLRHGQYDAVEYVLSLVDTYSRKEKICLSLQSDGGEWSTLLHLLGCCFI
AQSQRGLHGLKKERKISEAVRCFFRAASVEGAANALQSLPNEAGWLHLGFSQQVSPAAWK
LHYYQWAMQIFEQHNMREAACQFALAALEQVDEALGSGVLDESATAVKGRLWANVFKFTL
DLNYYYDAYCAIISNPDEESKTICLRRFIIVLYERGAVKILCDGQLPFIGLSEKVERELA
WKAERSDVSAKPNPFKLLYAFAMQRHNWRRAASYIYLYSAQLRIHGATQDLQRRSFILQE
RLNGLSAAINALQLVHPAYAWIDSPLEETYSNIYPSKKSRITMEEQSPGNGTQSQRQRSY
LDVEKLENEFILTSAEYLLSLANVSWTFAKIEAAPTDVIDLLVESSSYDMAFTVILKFWK
GSALERELERVFAAISLKCCPKRTPSVGNGHRMQSLLLTSSQDEIVVRGSPNVGPPSQES
KGSSHWETLELYLEKYKKFHAKLPVVVADTLLAADSQIELPLWLVQMFKGVPAKSGGGMA
GSESNPATLFRLYIDYGRYTEATNLLLEYIESFASLRPADIIRRKRPFAVWFPYSLIERL
WCQLQQSIKLGHMVDQSEKLKKLLQGSLMNHLHQLKVDSDDVMSSVS
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtcagtcgtgtttagcaggtatggaagttcccattattggcagcgattccgtc
aagtttgtgcaactctccgtcccttcttctacttctacttccgtttcttctccaactcct
cctactgcgggaagagacgtcggttcttgctccatcattgggaaccctcccgcctatttc
acttggaaaatttgcagaagtcatccaaatgtgttggaagtaatggagttctgtggtcat
aaggagttcccaaaaacaggattgcaaattgtattcccagaagcactttttccatttgca
gtgatctgcaaaaatgaaatggcattatcttctgtcaaaccatatttgcttcatgccatg
acagtgtccggggttgcctaccttattaaacttgaaaatatctccaattatgtatctagc
tcccatttgcaatctggtgattttgttgacttcaacactctgactaatcctcatcaagga
gcagcaacagcagtggcaggaatagcagaactgatggtagttggaagaagtgatggatca
gttggattcttccagcttggcatccttgaccaacgagctccaggctttgtgcaggaactg
cgtgatgattctggtcttggtcgtttgtggggcgttttgtcaaggggaaggtcaaatgct
gcagtccaggatctagtaatatcagagtttcaccagaaaaagcttctattcgtgcttcac
tctgatgggaacttacgtgtgtgggacctttcaaatcgttccagaattttcagtcattct
ttaagtgtttcaccatcagcaggatccacttttgtaaggatatgtgtgggaaacgaccac
aacaatcctgatgcaattcctatggcagtactgcaaaaagatgattcggaagttggcaca
gcagtgatctctttatataacctttatctcagtactggggacagaattaacttgttactg
gatccttcaacaaaaagcatctcgttggaagagggggacctcattgatataaaacttact
ccaaacaagttgtggatactcagagaaaatggattggtcatgaaggagttgtcttgtcaa
aataggaatgaggaattagcgcattgctattctttacaggatgcatttgttgctgagcag
ctgtttcaaggctctgaaaattcgtcagatgatctactttggctttctcacacagttttg
tcatcttcaaaggatcagatttctccgtttctatcttctgttttcttacataggttgctc
cttccgggtgtttatcacagaaatgttcttcgggtaacattacgatattttagcaagcac
ttcactgattccgaatttgactctctgactgtggatggactgagaaatgaaattctgtca
gtcattcaacacgaggtgggagctgatagtccaatttcagtacttcagagctggaaaacc
ttttgtacctgttattttaataattggtgcagaactaatgtagcgtgtggtttgcttatt
gattcagccacacaagctgtgggtgtaattagaaaaaactcagtctccatgtgtcgtagt
ctggaggacatagagcttcttgtttttgcctcaggatcttccggtgaacatggaaatata
atatgctctaggtttgactcctccgatagtgatcttgaacgggaaattctttttgaaata
ctgcagtgtgttaatactctccgtcaacagttgggcaaagctgctcctgccatattttat
gagtctcttcttagaacaccaagtttatcatctgaagaagtcattcctcggttgctgaaa
aatttagaaagtggatatagctcatcaatggcactccatgtatccgaacttggaactgat
gtagcattggataaggaaatttcctaccacaaaagtctcagaaaattttcagtagatatg
tttttatctctgcacaacttgtgcagtagagctaccacatggaggagcgttttgcatgtt
attgaaagctatttgaaatttctcgtgcctcgaaaatatgagcataacttggattctgaa
ggactcttcacagtcagcactgcccttacagtgcaggcgacttctcaggttgctaaagtg
atgtttgaatctgcattggatgtgcatttgcttctaagctacatggttaacagtagcagt
cagattggcatgttagaggatgaggtttcgaaagtaaaacttgagttggttccaatgatc
caagaggttattactgagtggcatataatcaatttctttagtaccacaccatctgaatct
cctcttcttgaagacttcagcagtcaactttcatctttacagcttgatggaaatgttgat
cggagatcatggaatgagaaacttggtaaatctgaattcacattggcctttattctgtta
cttggaggtcatagtgggccatcttttggacatcttcctgatcccaacagtctaagtaaa
tcagtacaagaatttgctagctggataatgtgggggagaacagaagcagaaccatctgtt
ttcttcagtcattcgataggtcttgctctggtgttgcttagacatgggcaatatgatgct
gttgagtatgtactcagtttggtggatacttattctcgcaaggagaagatttgcctaagt
cttcagagcgatggtggggagtggtccactctgttgcatcttcttggttgttgctttatt
gcacaaagccaacgtggtttgcatggattaaagaaagaaaggaaaatttctgaagcagtg
cggtgcttttttagagctgcgtctgtggaaggagctgccaacgctttgcaaagtttgcca
aatgaagcaggatggctacaccttggtttctctcaacaagtctcacctgctgcttggaag
cttcattactatcaatgggcaatgcaaatatttgaacaacataacatgagggaggctgcc
tgccagtttgctcttgctgcacttgagcaagttgatgaagctcttggatctggtgttctt
gatgaatcagcaactgctgtcaagggacgtctttgggcaaatgtcttcaagttcacttta
gatctgaactattactatgatgcgtattgtgcaatcatttcaaatccagatgaggaaagc
aaaaccatttgtctaaggcgatttataattgttctatatgagcgaggagctgtgaagatt
ctttgtgatggccagctaccatttattggcttgtctgagaaagtggagcgagagcttgct
tggaaggctgagcgttcagatgtttcagccaagccaaacccgttcaagttgctctatgcg
tttgctatgcagagacataattggcggagagcagcgagctatatttacttgtattcagca
caattaagaatccatggtgcaacgcaagatctccaacgacgatcctttattctgcaggag
aggctgaatgggctttctgctgctatcaatgctctacagctggttcatcctgcatatgct
tggattgattctccacttgaggaaacttactctaatatatatccaagtaaaaagtctagg
ataaccatggaagaacagtctcctggtaatggtactcagtctcagaggcaaaggtcatat
ttagatgttgaaaaacttgagaatgagttcattctaacgtcagctgagtatttgctgtca
ttggcaaatgtctcttggacttttgctaaaattgaggcagccccaactgatgtgattgac
cttttggttgaatcaagctcgtatgatatggcttttacagtaattctgaaattttggaaa
ggttcagctttggagagggaacttgaaagagtttttgcagctatatcattgaaatgctgc
ccaaagagaaccccatctgttgggaatggtcacaggatgcagagtcttcttttgacttca
tcacaggatgagattgttgtccgtggatcgcctaatgttggtccaccttcacaggaatct
aaaggcagtagccattgggagacacttgagctctatctcgaaaaatacaaaaagtttcat
gctaaattgcctgttgttgttgctgatactcttcttgctgctgattctcaaattgagttg
cctctttggttggttcaaatgttcaagggtgtgccagcaaaaagtggtgggggaatggca
ggaagtgagtcaaaccctgctactttgtttcggctatatattgactatggtcgttatact
gaagcgactaatctgcttctggagtacattgaatccttcgcgtcactgagaccagctgat
attattcgtcgtaagaggccatttgcagtttggtttccctattctttgattgaacgttta
tggtgtcaacttcaacaatctatcaaactaggccacatggttgatcaaagtgaaaagctg
aaaaagttgttacagggctctctcatgaaccatctacatcaacttaaagtggattcagat
gatgtgatgtcttctgtttcctag
DBGET
integrated database retrieval system
