Solanum pennellii: 107007786
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Entry
107007786 CDS
T04130
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107007786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007786
03041 Spliceosome [BR:
spen03041
]
107007786
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107007786
Spliceosome [BR:
spen03041
]
Complex B
Other components
Prp19-related factors
107007786
Complex C
107007786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
ARM_TT21_C
ARM_TT21
Imm5
Motif
Other DBs
NCBI-GeneID:
107007786
NCBI-ProteinID:
XP_015062044
LinkDB
All DBs
Position
1:91700242..91708791
Genome browser
AA seq
916 aa
AA seq
DB search
MSIPKELYPTEDDLPYEEEILRNPFSLKQWWRYLVARADAPFTKRRVLYERALQALPGSY
KIWHAYLRERLELVRNLPINHSLYQALNNTFERALVTMHKMPRIWIMYLVSLTQQKLVTR
TRRTFDRALCALPVTQHDRIWEHYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDLLEFL
LNSELWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRKLVERARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSDSEVEDEGTNGEVGAEEDVDEEDDRLNVAKLEKKLKEFWLNDDKDIDLRLAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTFTEAVRTIDPMKAVGK
PHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGAL
ELMRRATAEPTVEVKRRVAADGNEPVQIKLHKSLRLWLLFVDLEESLGSLESTRVVYERI
LDLRIATPQIIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEQTPADAVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPANEKLS
MYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRARALYK
HSSQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKD
QMQTLEEAKDVLKKAGIADDEMAALERQLVPPENDTKSKEESRVVGFVSAGVVESNGQKV
TANNEDIELPEESDSEEDDDKVEISLKEVPDAVFGGLIRKRDEGDEAEDNSTAKNKDSDG
PLGALERIKRRKQQAS
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattccaaaggagctctatcccaccgaagatgacctcccgtacgaggaagagatc
ctcagaaatccgttcagcctgaagcagtggtggcgctatctagtggcacgagcagatgcg
ccattcacaaaacgaagagtgctttacgaacgagctctacaagctctccccggaagctac
aaaatatggcacgcgtatctccgcgaacgtctagagttagttcggaatcttccaatcaac
cactcgctgtatcaagctctaaacaacactttcgagagagcgcttgttacaatgcacaaa
atgccacggatttggatcatgtacttggtgagtttaactcaacagaagctcgttactcga
actagacgcactttcgatagagcattgtgtgcattacctgttactcaacatgataggatt
tgggaacattatttagtgtttgttagtcaaaggggaattcctattgaaacgtcacttagg
gtttataggaggtacttgaagtatgacccttcccatattgaggatttgcttgagtttttg
ttgaattctgagctgtggcaggaggcggcagaaaggttagctggtgtattaaatgatgat
cggttttattctattaaagggaagactaaacataggctctggttggagctatgtgacttg
ttaacacagcatgctactgaaatatcaggtttgaatgtggatgccataattagaggtggg
attaagaagtttactgatgaggttgggaggctttggacatcgttggcggattattacatt
aggaggaagttggttgagagggcaagagatattttcgaagaagggatgacaactgtggtg
actgttagggattttagtgttatctttgatgcatactcccagtttgaggagagtatgctt
gccttgaaaatggaggagatgagtgatagtgaggtggaggatgaagggactaacggtgag
gttggggcagaggaagatgtggatgaggaggatgataggttgaatgtggcaaaattggag
aagaagcttaaagagttttggctaaatgatgataaggatattgacttgagattagcgagg
ctagaacatcttatggataggaggccagagcttgcgaatagtgtgcttttgaggcaaaat
ccgcataatgtagagcagtggcatagaagggtaaaactattcgaagggaatccaacaaag
caaatattaacgttcactgaggcagttagaactattgacccaatgaaagctgtggggaag
ccacatactttgtgggttgcatttgcaaaactttatgaaaaccataaggatattgcaaat
gcaagagtcatctttgataaggcagtgcaggtgaattataaaactgttgatcatctggct
agtgtttggtgtgaatgggccgagatggaactacgtcacaggaatttcaagggtgctcta
gaactgatgagacgtgccactgctgaaccaactgttgaggtcaaacggagagttgctgct
gatggaaatgaaccagtgcaaattaagctacacaaatctctaaggctttggttactgttt
gtggatttggaggagagtctaggaagcttagagtcaactcgtgtggtctatgagcgaatt
ttagatctgagaattgctacaccacagattataataaattatgcagtacttctggaggat
cacaagtactttgaggatgcattcaaggtttacgagaggggtgtgaagatcttcaagtac
ccacatgttaaggatatatgggttacctatctttccaaatttgttaagagatatgggaag
tcaaagttggaacgagctagagagttatttgagcatgctgttgaacagacccctgctgat
gctgtgaagccattgtatcttcaatatgctaaattagaggaagactatggtcttgcgaag
cgggctatgagggtttatgatcaagctacaaaagctgttccagcaaacgagaaattgagc
atgtacgagatctatatagctcgtgcagctgagatatttggtgttccaagaacacgggag
atatatgaacaagcaattgagtctgggcttccagacaaggacgtgaaagttatgtgctta
aagtatgctgaacttgagaagagcctaggcgagattgatcgtgctcgtgcactatacaag
cactcatcacaattcgcagatcctagatctgaccctgatttctggaacaagtggcatgag
tttgaggtgcagcatggtaatgaggataccttccgcgagatgctccgtgtgaagaggagt
gtatctgcaagctacagccagacacattttatcctaccggagtatctcatgcaaaaggat
cagatgcagacccttgaggaagcaaaggacgttttgaaaaaagccggtattgctgatgat
gagatggcagctcttgaaagacagttagtgccccctgaaaatgatacaaagagcaaagaa
gagagtcgggtagttggatttgttagtgcaggagtagttgagtcaaatggacagaaagtc
actgcaaacaatgaggatattgagctacctgaggaaagtgattctgaagaggatgatgat
aaggttgaaatttcactgaaagaagtccctgatgcagtgtttggaggtctaatccgtaag
agggacgaaggtgatgaagcagaagacaactctactgccaagaataaagatagtgatggc
cctcttggcgcgctagaaagaataaaacgaaggaaacaacaagcatcttaa
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