Solanum pennellii: 107007914
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Entry
107007914 CDS
T04130
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107007914
03015 mRNA surveillance pathway
107007914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107007914
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107007914
mRNA cycle factors
P-body specific factors
107007914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
107007914
NCBI-ProteinID:
XP_015062249
LinkDB
All DBs
Position
1:102563114..102575346
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AA seq
485 aa
AA seq
DB search
MKGPLDRSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIEF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPQHWSKKDGREGTILKDPEYLE
FLEFISKPIENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARKSIANG
RPTRRASGTSAGSPSSSASKRSSEKRRASTSMYVLRDSSKAGSGKDKTYILAPKRDDQQR
AEKSGTSAPVSVANAVEEETGGAADVGKKKILLLKEKEKENPNNQRREASGRIIRSILLK
DARQNQVPSASQQEKHRVDKDKKPPRPPSVQLFHRETNGANEDRVLGADLHVVHTEKQEK
RTRIRDRPDRGVWTPLRRSDSLHASDESLSSSASQSSEVPDFVEGSPGETKHGLINARGA
EFRPMGSGRNSHSSFDNGTYKHGGRRGMRDDGISVGEGKPLRRGGPSSYNTHEKQVWVQK
SSSGT
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggccgttagatcgatcaaaagtagtgctgcggcacttgccgccgacaatttct
cagtccatgcttcttgaccaagttgattcccgattcgctggtcgatacaactggttctgt
tttctacccggcaagtccagtcagaagcatcaaacttattcaagagcctatattgaattt
aagaggccagaagatgttatcgagtttgcagagttctttgatggacacgtttttgtaaac
gagaaaggcactcagttcaaaactattgtcgagtatgctccttcacagcgtgttccacaa
cactggtccaagaaggatggccgtgaaggaaccatcttgaaagatcctgaatatctggag
ttccttgaatttatctcgaaacctattgagaatcttccgagtgcagaaatacagttggaa
agaaaggaagctgaacgcgcgggttctgcaaaggatgctcctatagttactccattgatg
gattacatacgtcagaaaagagccgccaagagtggagctcggaaatctatagctaatggg
agaccaaccagaagagcgagtggcacatccgcaggaagtcctagctcaagtgcgtctaaa
cgaagctctgaaaagagacgggcttccactagcatgtatgttcttcgagatagttctaag
gctgggagtggcaaagacaaaacatatattctagctccaaaacgtgatgatcagcagcgt
gctgagaagtctggtacctctgctcctgtatctgtggctaatgcagttgaagaggaaact
ggtggagctgctgatgttggcaagaagaaaatcctgctcttgaaggaaaaggaaaaagaa
aatcctaataaccagcgtcgtgaggcaagtggaagaatcattagaagtattcttctcaag
gatgctcgtcaaaatcaggtcccatctgcatcccaacaagaaaaacacagggtggataag
gacaaaaagcctcctaggccaccaagtgtccagttgtttcatagagaaactaatggagct
aatgaagatagggttcttggagctgatttgcatgttgtccacactgagaaacaggaaaaa
cgcactaggatcagggataggccggatcgtggtgtttggactcctcttcgtcgttctgat
agtttacatgctagtgatgaatctttatcttcatctgcctctcaatcttccgaagtgcca
gattttgttgaaggaagtccaggtgaaaccaaacatggtctgataaatgctcgtggtgcg
gagttcagacccatgggaagtgggcgtaattctcattcttcttttgataatggtacttat
aaacatggtggtcgtcgtggtatgagggacgatggaatttcagtaggggaaggaaagccc
ttaagaaggggaggtccttctagctataatacccatgagaaacaagtgtgggtccaaaag
tcaagttctggtacttag
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