KEGG   Solanum pennellii: 107008101
Entry
107008101         CDS       T04130                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
spen  Solanum pennellii
Pathway
spen03018  RNA degradation
spen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107008101
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107008101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107008101
   03041 Spliceosome [BR:spen03041]
    107008101
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107008101
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107008101
Spliceosome [BR:spen03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107008101
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 107008101
NCBI-ProteinID: XP_015062497
UniProt: A0ABM1FW39
LinkDB
Position
1:100379678..100382718
AA seq 147 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVGGRGRGRGGRDEGAAGRQGKGIGRGM
EDAGAKGRGKGGPGAKSGGKGGGRGRG
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttcccctctctttgctcaagactgcacaggggcatcccatgttggtggaactaaaa
aatggagagacttataatggtcatttggtgaattgtgatacttggatgaatatccatctt
cgtgaagttatctgtacgtcaaaggatggagatagattttggagaatgcctgaatgttat
attcgtggcaataccataaagtatcttagagttcctgatgaggttattgataaagttcaa
gaagaaacaaaaagccgtggagatagaaaaccacctggtgtaggtggacgaggtagggga
agaggaggtagggatgaaggtgctgctggaagacaggggaaaggcattgggcgtggaatg
gaagatgcgggagccaaaggccgaggcaaaggaggacctggtgccaagtctggtggaaaa
ggtggtggccgtggacgtggctga

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