Solanum pennellii: 107008265
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Entry
107008265 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107008265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107008265
03012 Translation factors [BR:
spen03012
]
107008265
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107008265
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107008265
Translation factors [BR:
spen03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107008265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
AAA_16
T2SSE
AAA_23
PhoH
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
107008265
NCBI-ProteinID:
XP_015062711
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All DBs
Position
1:1513224..1527698
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AA seq
1164 aa
AA seq
DB search
MHSRVGFLLACTKRRSSSSTFLLSTLFSSHHNRKIFVACHRRILIGSDISKIYFFEESNF
RGLRQLRGFCRYPGIASLEQFSDDEYECDYENHPASSSVANVDEWKWKLSLLLRNEKDHE
IVSRDKRDRRDYEQISNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVVIPL
SLQRRVEGLLQEHIDRTQLSRGKDDNILDGTKSSDIVTDANMDENPDSFLDGSVMEKVLQ
RRSLRMRNMQRGWQESPDGNKMLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCGKTT
QLPQYILESEIESGRGAFCSIICTQPRRISALAVAERVATERGEPLGDSVGYKVRLEGVK
GKNTHLLFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLR
LILMSATLNAELFSSYFGGAPMIHIPGFTYPVRANFLEDVLEITGYKLTSFNQIDDYGQE
KMWKTQKQLAPRKKKNQITALVEDAVEKSNFENYSPRARDSLACWAPDCIGFNLIEAVLC
HICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLVLTCHGSMATSEQKLIFEK
PPQNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQR
RGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAGFLSSAL
QPPESLAVQNAIQFLKMIGALDENENLTHLGKFLAILPVDPKLGKMLIMGTIFRCFDPVL
TIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYC
WRNFLSAQTLQAIHSLRKQFIFILKDAGLLDADTATNNKLSYNQSLVRAVICSGLYPGIS
SVVNRETSMSFKTMDDGQVFLYANSVNARYQTIPYPWLVFSEKVKVNTVFIRDSTGVSDS
IVILFGSALDCGDMAGHLKMLGGYIEFFMDPSLADCYIKLKEELDILLQKKLQDPEVDIH
KEGKYLMLAVQELVSGDQSEGRFVFGRENKKPKDSDADRFTRDGTNPKSLLQTLLMRAGH
SPPKYKTKHLKTNEFRALAEFKGMQFVGKPKRNKALAEKDAAIEALAWLTQTSDKNHDED
DKSPPDVTDNMLKLLGKRRRSKRR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgagagtagggtttctcttagcatgcacaaaaaggaggtcttcttcgtctacg
tttcttctatctactctgttctcttctcatcataatcggaagatatttgttgcttgtcac
cgtcggattttgattggtagtgatataagtaagatttatttcttcgaagaatcgaatttt
cgtggattgcgacagctgcgtgggttttgtagataccctggtatagcatctttagagcaa
ttctccgatgatgagtatgaatgcgactacgaaaatcatccggcttcgtcatcagtggcc
aatgtagatgagtggaaatggaaacttagcctgctgttgcgcaatgagaaggatcatgaa
attgtatccagagataaacgggatagaagagactatgaacagatatccaaccttgctaaa
aggatgggtctctatagtgaaatttatgggaaagttgtagtggtgagcaaggttcctctt
ccaaattacagacctgatcttgatgataagcggcctcaaagagaggtagtaatcccacta
agtctgcaaaggagagtagaaggcttgcttcaagaacatattgatagaacacaactcagc
aggggaaaagatgacaacattttagatggtactaaatcctctgatatagttacagatgct
aatatggatgaaaatccagattcattcttagatggctctgtcatggagaaggttcttcag
aggcggagcttacgcatgcgtaatatgcagaggggttggcaggaatctcctgatggcaac
aaaatgctagaattccggaaatctcttcctgcatttaaggaaaaagaaaggctgctccaa
gcaattgcacgtaatcaggtggtagtaatttctggcgagacaggatgtggtaagaccact
caactgccacagtacattctagagtcagagatagaatctggccgtggagcattttgtagc
ataatttgtacgcaacctcgaagaatatctgctttggctgttgcagaaagagtggctaca
gaaaggggagaacctcttggtgactcagttggttataaagtacgattagaaggggtgaaa
ggaaaaaatacacatttgctattttgtacgagtggtattttgcttcgtcgtcttctcagt
gaccgcaatcttgacggtataacccatgttttcgttgatgaaattcatgagcgaggcatg
aacgaagatttcctgttgattgtgttgaaggatcttcttccacgacgcccagatttgaga
ttgattttgatgagtgctactcttaatgctgaattattttccagttactttggaggagct
cctatgattcacatcccaggcttcacatatcctgtaagagcaaactttctggaagatgtg
ctggaaattacgggatataagttgacttcattcaaccaaattgatgattatggccaggag
aagatgtggaaaacacaaaaacagttagcaccccgcaaaaagaaaaatcagataactgct
cttgttgaggatgctgtagaaaaatcaaacttcgagaattatagtccaagggcacgtgat
tcactagcatgctgggctcctgattgtattggattcaatcttattgaggcagttttgtgc
catatatgtcggaaagaacgtccaggcgctgtactagtatttatgactggttgggaagat
attagttgtttaagagatcaacttaaagcacatcctctcttgggtgacccaaatagagtg
ttggtgctcacttgtcatggttctatggctacctctgagcagaaactcatatttgaaaag
ccacctcagaatgtacgtaaaatagtacttgcaacaaatatggccgaggcaagtattact
ataaatgatgtggtctttgtggtggactgtggaaaagcgaaggagacgacttatgatgct
ctaaataatactccgtgtttgttaccttcatggatttcacaagcttctgcacgacaaaga
aggggtagggctggccgtgtccaaccaggcgagtgctaccacttgtatccacgatgtgtg
tatgaagcttttgctgaataccaactacctgaactcctgagaactcctttaaattctctt
tgcttgcaaataaagagtttgcaggttggaagtattgctggattcctttcgtctgcgctt
cagcctccagaatcattggctgtgcaaaatgctattcagtttttgaagatgattggtgca
ttagatgaaaatgagaatcttacacatctaggcaaatttttagcaatcctccctgtggat
cccaagcttgggaaaatgctcattatgggtactattttccgttgctttgatcctgttttg
actattgtagctggtcttagtgtacgggatccatttctgttgcctcaagataaaaaagat
ttagcgggaacagcaaagtccagattctcagccaaggactatagtgaccatatggcgctt
gtccgtgcatatgaaggatggaaagatgctgaaagggaaggttctgcctacgaatattgc
tggaggaatttcctctctgcccagactcttcaagctatccattctcttagaaagcaattt
atcttcatcttgaaagatgctggattgcttgatgctgatactgcaactaacaataagcta
agttacaatcagtctttggttcgtgctgtcatatgttctggattgtatcctggaatttct
tcagtggtgaatagagagacatcaatgtccttcaagactatggatgatggacaagtcttt
ctatatgcaaattcggtcaatgctcgctatcaaacgattccatacccttggctggtgttc
agtgaaaaagttaaggtcaatacagtcttcatacgggattctactggagtatctgattcg
attgtgatcctatttggtagtgctctagactgtggagatatggctgggcatttaaagatg
ttaggtggatacatagagttcttcatggatccttctctggcggattgctacataaagctc
aaagaggagctcgatatacttttgcaaaagaagcttcaagatcctgaggtagacatccac
aaggaaggcaaataccttatgcttgctgttcaggaactggtttcaggagatcagtctgag
ggcaggtttgtgtttggtcgtgaaaacaagaagcctaaagattctgacgctgatagattt
acaagggacgggacaaacccaaagagtttgttgcaaacgctacttatgagggcgggtcac
tcccctcccaagtacaaaacaaagcatctaaaaacaaatgaatttagggcacttgcagag
ttcaagggaatgcaatttgtaggtaaaccaaagagaaacaaagcccttgcagaaaaggat
gctgcaatagaggcgctagcatggttaactcaaacatctgacaagaatcatgatgaagat
gataaatctcctcctgatgtcaccgataacatgctgaagcttcttggtaaacgcaggaga
tcaaagcgtcgctga
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