Solanum pennellii: 107008302
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Entry
107008302 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107008302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107008302
03012 Translation factors [BR:
spen03012
]
107008302
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107008302
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107008302
Translation factors [BR:
spen03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107008302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
SR-25
nSTAND3
NACHT
AAA_19
Motif
Other DBs
NCBI-GeneID:
107008302
NCBI-ProteinID:
XP_015062765
LinkDB
All DBs
Position
1:1814945..1824503
Genome browser
AA seq
1031 aa
AA seq
DB search
MSVRLLNHPHSSALLRFHFCNSLRSSLQRNYSFSHSVMAYRPNYRGGRRGGGGGGGGRGG
GGRGRGGGGGRGGEQRWWDPVWRAERLRQQAAEMEVMNENEWWGKMEQFKRGGEQEMVIR
QNFSRDDQQKLSDMAYQLELYFHAYNKGKALVASKVPLPSYRADLDERHGSTQKEIRMST
EIEERVGNLLSSSQDTVSAGTSSSTSGNSAKLSSKAVETAKPKLTKEDDIATKRLNVELK
QKQEKTRESEKVKAMISFREKLPAFKVKSEFMEAVANNQVLVVSGETGCGKTTQLPQFIL
EEEISSLRGVHCNIICTQPRRISAISVAARISSERGESLGDTVGYQIRLEAKRSAQTRLL
FCTTGVLLRRLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLCLILMSAT
INAELFSKYFRDAPTIHIPGLTYPVAELFLEDVLEKTRYLIKSEADNFQGNSRRRMRQQD
SKRDPLTDLFEDVDIGSHYKGYSMTTRQSLEAWSGSLLDLGLVEASIEYICRCEGEGAIL
VFLSGWDEISKLLDKIKANNFLGDTRKFLVLPLHGSMPTVNQREIFDRPPANTRKIVLAT
NIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVC
YRLYPKLIHDAMAQYQLPEILRTPLQELCLHIKSLQFGAIESFLAKALQPPDALSVHNAI
ELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRDPF
VLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRYGKERTFCWENFLSPVTLQM
MEDMRNQFIDLLSDIGFVDKSRGAKAYNKYSNDLEMVCAILCAGLYPNVVQCKRRGKRTA
FYTKEVGKVDIHPASVNASVHLFPLPYLVYSEKVKTSSIYIRDSTNISDYSLLMFGGNLT
PSKSGDGIEMLGGYLHFSASKSVLDLIKKLRVELDKILKRKIEEPHFDVSVEGKGVVAAV
VELLHSQDIRY
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgtcttctaaaccacccacactcctccgcccttctccgttttcacttctgt
aactctcttcgttcatcactccaaaggaattactctttttcccattccgttatggcttat
cgtccgaactaccgaggcggtcgccgcggcggcggcggcggcggaggaggacgcggtggt
ggaggccgtggtcgtggaggaggaggaggacgtggtggtgaacagcgatggtgggatcct
gtgtggcgtgctgaacgacttaggcaacaggcagctgagatggaggtgatgaatgagaat
gagtggtgggggaagatggagcagtttaagagaggaggggagcaggaaatggttataagg
cagaattttagtagggatgatcaacagaagttgtccgatatggcgtatcaattagaactt
tacttccatgcttataacaagggaaaggcacttgttgcaagtaaagtcccattgccaagc
tatcgtgctgatcttgatgagcgtcatggatctacacagaaagagattaggatgtccaca
gagattgaggaaagagtcggaaatctattgagtagttcacaagacacagtatctgctggg
acttcctcttcaacatctggaaattctgccaaattatcatccaaagctgtagaaacagcc
aaacctaagttgactaaagaggatgatattgccaccaaaagacttaatgtggaacttaaa
cagaaacaggaaaagacgagggaaagtgaaaaagtcaaggcaatgatctcattcagagaa
aaacttccagcatttaaagtgaaatctgaatttatggaagctgttgcaaataatcaggtc
ttggtagtttctggagagactggttgtggaaagactacacagctccctcaattcattcta
gaagaggagatatcatcccttcgtggggttcattgtaacattatatgcacccagcctcgc
cgtatatctgcaatatcagttgctgctcgaatatcctctgaaagaggagagagtcttggt
gatactgttggctaccagatccggctggaagcaaagcgctctgctcaaacacggttgcta
ttttgcacaacaggagtgttactgcggcgtctggttcaggaccctgatttgactggtgtt
agccatctgcttgttgatgaaatccatgaaagaggcatgaatgaagacttcctcttgata
attttacgtgatctccttcctcgacgacctgatttgtgtctcattctgatgagtgctact
attaatgctgagttgttctccaaatactttagagatgcacccacgattcatataccgggt
ttgacgtatccagtggcagagctgtttcttgaagacgtgttggagaagactcgttacctt
ataaaatccgaagcagacaatttccaaggaaactcaaggagaaggatgaggcaacaagat
tctaaaagagatcctctaactgatctttttgaggatgtggacattggttcacattacaaa
ggctacagcatgactacaagacaatctctggaagcatggtctggttcactgcttgatttg
ggtcttgtcgaagcatcaattgaatatatttgtcgctgtgaaggtgaaggtgcaattctt
gtgttcctatctggttgggatgagatttctaagctacttgataaaattaaggctaacaac
ttccttggagacaccaggaagtttttagtccttcctcttcatggttcaatgccaacagta
aatcaacgagaaatatttgatcgtccacctgctaacacgaggaaaattgtgcttgcaacc
aacatagctgagagcagtataactatagatgatgtcgtatatgtcatagactgtggtaag
gcgaaagagactagctatgatgcacttaacaagctagcttgtttattaccatcatggata
tcaaaggcctcagcacatcagaggcgtggtcgtgcgggccgtgtacaacctggagtttgt
tataggttgtatccgaaactaatacatgatgctatggcacaatatcaactacctgagatt
cttcgaacaccattacaagagctttgtctccatattaagagtttgcagttcggcgccatt
gaatcctttttggccaaggcacttcaacctccagatgctctctctgtccacaatgctatt
gaacttctcaaaactattggagctctggatgatacagaagaacttactccacttggccgc
catctttgcactctaccgctggatccgaatattggaaagatgcttctgatggggtccatc
ttccaatgtctgaaccctgcactgactattgctgctgctctggcacaccgtgatccattt
gtccttccaataaacaggaaagaggaagccgatgctgctaaaagatcctttgctggtgat
tcttgcagtgatcatattgcacttcttaaagcatttgaaggatggaaagatgctaagcgt
tacggaaaagaaagaaccttctgctgggaaaatttcttatctcctgtaaccttgcagatg
atggaagacatgagaaatcagttcattgacctactgtcagatattggttttgtggataaa
tcacgaggagccaaggcatacaataaatatagcaatgatttagagatggtatgcgccatc
ctttgtgcaggcctctacccaaatgtcgtgcagtgtaaaagaagaggaaagcgtacagca
ttttacacgaaggaagttggaaaagtagacatccacccagcatctgtcaacgctagtgtc
catcttttccctcttccctacttagtttacagtgagaaagtcaaaacctcaagcatttat
atcagagattcaacaaacatatccgattattctcttcttatgttcgggggtaatctcact
ccaagcaaaagtggagacggcattgaaatgcttggaggctatcttcacttttccgcgtca
aaaagtgtgttggatttaataaagaaactccgcgtggaactggacaaaatattaaaaagg
aaaatcgaagagccccactttgacgtctcagtcgagggaaagggtgtagttgctgctgtg
gttgagttacttcatagtcaagatatacggtactga
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