Solanum pennellii: 107008468
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Entry
107008468 CDS
T04130
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107008468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107008468
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107008468
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
ERCC3_RAD25_C
NUP120_helical
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
107008468
NCBI-ProteinID:
XP_015063003
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All DBs
Position
1:107628269..107636045
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AA seq
922 aa
AA seq
DB search
MDLATEGWRNNFANPMAKRAQPYSPRDLFSKGIKKMKFDESKNQSSPTAAASSWREECEH
GKEKGSSRVANRSETFAIPDLLKVLDSGKFGSVTREIEDLIMRRMEAVNSCYASDPSLPN
KVLEWERNHGWAFKGNQPSPAVIDLEDGQETNNIASGPMISACLPPAELLVIIDSDDEDT
QKETIFPSQGIYSQINPILGMPLKNAALDFQIKDFMGREYGERQISVEAVSLAGEAEIEK
DKGVYVGVEDDDEIDDGAEQPDEGLTDIWNEMSFALEFSKDVAAEPSPDEHTFEEEDECD
HSFILKDDIGYVCRICGVIKRSIETIIEFQYSKAARSTRTYHYEGRSVKDIGPTELLPDG
IIPSDDIDMTEIFVHPRHRKQMKSHQVEGFNFLVSNLLRDKGGCIMAHAPGSGKTFMIIS
FLQSFMANNDRARPLVVLPRGILGTWKKEFLRWQVDEIPLYDFYSVKADNRSQQLEVLKQ
WSQERSVLFLGYKQFSTIVCDNVGSATAAACQEILLKCPSILILDEGHTPRNQDTDVLTS
LEKVQTRLKVVLSGTLYQNHVKEVFNILNLVRPKFLKLETSRSIKRTILSKVASSNRRNL
LKKSNDNDFYELVEHTLLKDDNFSRKSAVILGLRKMTEKVLHYYKGDFLEELPGLVDYTV
LLKLHPKQKSEVAELKKLGRKFKISSEGSALYVHPQLKSLSRNCSAKDRVDEEKIDTLLE
NLELREGVKAKFYLNLLQLCETKGEKMLVFSQYLLPLKFLERLTVKTKGYSLGKELFMIT
GDTDGDIRESSMERFNTSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIG
RAFRPGQERKVYTYRLVASDSPEEEDHTTCFKKESIAKLWFEWSENYAQPDFEMETVDIN
NCEDLFLESSRLNEDLVALYKR
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaactgaaggatggcggaacaattttgctaacccaatggcgaaaagggct
cagccgtacagccccagagatttgttttccaaggggataaaaaagatgaaatttgatgaa
agtaaaaaccagagtagccctactgcagctgcctctagttggcgggaagaatgcgaacat
ggaaaagaaaaggggtcttcaagagttgccaaccgctccgaaacttttgcaattccagac
ttgctcaaagtgttagattccggcaaatttggaagtgtcaccagagagattgaggacctt
attatgcggcgaatggaggcagtgaactcttgttatgcaagtgacccttcacttcccaac
aaagtcttggaatgggaaaggaaccatggatgggctttcaagggaaatcagccttccccc
gctgtgattgacttggaggatggacaggaaactaacaacattgcttcagggccaatgatt
tctgcatgtttacctccagctgagctgctggtcattattgattcagacgatgaagacact
cagaaggagactatttttccatcccaggggatatactctcagataaaccccattctgggg
atgcccttgaaaaatgctgctcttgatttccaaattaaggattttatgggcagggaatat
ggtgaaagacagatttcggtagaagctgtaagccttgctggcgaagctgaaatagagaaa
gataaaggtgtttatgtcggtgtagaagatgatgacgagattgatgatggtgccgaacag
cctgatgaaggtttgacagacatatggaatgagatgtcatttgctcttgaattctcaaag
gatgttgctgctgaaccttcaccagatgagcatacatttgaagaggaggacgagtgtgat
cattccttcatcttgaaagatgatattggttatgtgtgtcgtatatgtggagttattaag
agaagtattgaaaccatcatagaatttcagtattcgaaggccgccaggagtacaagaaca
tatcactatgaaggtcggtcggtaaaggatatagggcctactgaactccttcctgatggc
atcattccatctgatgacattgatatgacggaaatttttgttcatccaagacataggaaa
caaatgaaatctcaccaagttgagggatttaattttcttgttagcaacttgttgagagat
aaaggaggctgtatcatggctcatgcccctggatctggcaagactttcatgataatcagc
ttcctacaaagcttcatggctaataatgatagagctaggcctttggttgtgttacctaga
ggaatcttgggtacatggaagaaagagttcttgaggtggcaggtggatgaaattcccctc
tatgacttctactcagtaaaagcggataatagatctcaacaattggaagttcttaagcaa
tggtcacaggaaagaagtgttctgtttctgggctataagcagttctcaacaattgtgtgt
gacaatgttggtagtgcgactgcagctgcttgtcaggagattctgctgaagtgcccgtca
attctcattcttgatgaagggcacactccgcgcaaccaagacactgatgttttgacttca
cttgagaaggtccagacacgcctgaaggtggtgctttctggcacattataccaaaatcat
gttaaagaggtctttaacattctgaaccttgtgcgtccaaaatttctcaagctggaaaca
tccagaagcattaaaaggacaatcctaagcaaagtggcaagctcaaatagaaggaacctc
ctgaagaaaagtaatgacaatgatttttatgagctcgtggagcatacacttttaaaggat
gacaatttctcaaggaagagtgctgtcattctaggtctgcgaaaaatgaccgaaaaagtg
cttcattattacaagggagatttcctcgaagaacttccaggattggtggattacactgtc
cttctaaagctccatcctaagcagaaaagtgaagttgcagagctgaaaaaactgggaaga
aagttcaaaatcagttctgaaggaagtgcactgtatgtgcacccacaattgaagagcctt
tcaagaaactgttctgctaaagatagagttgatgaagagaaaattgatactctattagag
aatttggaattgagggaaggagtgaaggccaaattctacctgaatctgctgcagctgtgt
gaaacaaaaggtgaaaagatgttagtgtttagccaatacctcttgcctttgaaattcttg
gagaggttgactgttaagactaagggttacagtttggggaaggaactatttatgatcact
ggtgatacagacggggacatcagggagtcctcaatggagcgatttaacacttcaccggat
gctcgtgttttctttggttcaattaaggcatgtggtgaaggaatatcacttgtcggggca
tcgcggattatcatattggatgtgcatctcaacccatcagtaacccgtcaagcaatagga
cgtgcattccgaccaggccaggagaggaaagtatacacttacagattggtggcctcagat
tcacctgaggaggaagatcatacaacttgttttaaaaaggagtctattgcaaagttatgg
ttcgagtggagtgagaattatgctcagcccgattttgagatggagactgtcgatatcaac
aactgtgaagatttgttcttggaatcatcacgtcttaatgaagatttggtggctctgtac
aaaaggtag
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