Solanum pennellii: 107008509
Help
Entry
107008509 CDS
T04130
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3 isoform X1
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
spen
Solanum pennellii
Pathway
spen04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107008509
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spen01002
]
107008509
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107008509
04121 Ubiquitin system [BR:
spen04121
]
107008509
Enzymes [BR:
spen01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
107008509
Peptidases and inhibitors [BR:
spen01002
]
Metallo peptidases
Family M67
107008509
Membrane trafficking [BR:
spen04131
]
Endosome - Lysosome transport
Others
Others
107008509
Ubiquitin system [BR:
spen04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
107008509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
DUF1908
Motif
Other DBs
NCBI-GeneID:
107008509
NCBI-ProteinID:
XP_015063060
LinkDB
All DBs
Position
1:80375461..80388843
Genome browser
AA seq
518 aa
AA seq
DB search
MRRPATMNIDAMARKVDVDNRIPLRNYYRIANNLLRQASIHRGEKNIIDLYIILLRYSSL
VTETIPSHRDYQALHPKERALSKKMLLTVLDELEGLKPEFQRQFQAIGEVQVTAQPYQVN
NLENHRYRPVGNSLGQPSTSNKASSYYDNQWAITNAPSSTWKQNNEYSHISSPSSIDKQF
QKLSFNFSVPKQETLSRHSFFGPNGLRGQWPGPSSEIKVNYPVHDDLAPNEIWSLNPVED
RPLVSKDTSLIVDKSSMESVLSLDDGRWLHPTEDSNFQFLDNVRSDNIPLSNLRQPSPPP
VLAQLQQEFRPISPSKVADPRPGPAKCIQDVPSSSNSFQHLHVPVRLMEDFLRLARENTK
KNLETCGVLAGSLKNRVFHITTLIVPKQESTSDSCQTLNEEEIFDVQDKRSLFPLGWIHV
SNTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTASPHGIFHLSDPAGVSVIRKC
QQRGFHPHEEPEDGSPIYEHCSHVYMNANMKFDIVDLR
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggccagcgaccatgaatatcgacgccatggcgcggaaagtcgacgtcgacaat
cgaattcctcttcgcaattactacaggatcgccaataatctcctccgacaggctagtatt
catcgtggagagaagaatatcatagacttgtatataatacttctgagatattcaagtttg
gttactgaaacaataccctctcatcgagattaccaggctttgcatcctaaagaaagagca
ttatccaaaaagatgctgttaactgtgctagatgaactagagggcttaaaacctgaattc
cagcgccagtttcaagcaatcggtgaagttcaagtaacagctcagccttaccaagtcaat
aatttggagaaccatcgatatagaccagttgggaattctttaggacaaccttctaccagc
aataaagcatcttcatattatgataatcaatgggccataacaaatgcaccttcatctaca
tggaaacagaacaacgaatattctcatatttcatccccaagttcaattgacaagcaattc
cagaagctatctttcaatttttctgttccaaagcaagaaacgttatcaaggcactctttc
tttggccccaatggtcttcgtggtcaatggccaggacctagttctgagataaaggttaat
tacccagtacatgatgatctagctccaaatgagatttggagccttaatccagttgaagat
agacctttggtgtccaaggacactagcttgatagtggataagtcttctatggaatcggtt
ctttctttggatgatgggcgatggttacatcctactgaggattccaattttcaatttctt
gacaatgtgcggagtgataacattcctttgagtaacttaaggcaaccttcgcctcctcca
gttttggcacaactacaacaggagtttcgtcctatatctccgtccaaagttgcagatcca
agacctgggcccgctaagtgcattcaggatgtaccgtctagttcaaattcttttcaacat
ttgcatgttccagtgagactgatggaagatttcttgaggttagctcgagaaaatacaaaa
aagaatttagaaacttgtggagttcttgctggttcactgaaaaaccgtgtttttcacatc
actactcttatagttccaaagcaggagtcaacttcagattcatgccagacattaaatgaa
gaggagatttttgatgttcaagacaagcgctctctctttcctcttggttggatccatgta
agtaatacacatccatcacaaacatgttttatgtcatcagttgatctgcatactcattat
tcttatcagattatgttgccggaagcaattgcaattgtgatggctcctacagacacagcc
agccctcatggcatattccacttgtctgatcctgctggtgtatctgttattcggaaatgt
caacaacgtggttttcatcctcacgaggagcccgaggatggaagtccaatatatgaacac
tgttctcatgtctacatgaatgcaaacatgaagtttgatattgtagaccttcggtaa
DBGET
integrated database retrieval system
