Solanum pennellii: 107008683
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Entry
107008683 CDS
T04130
Name
(RefSeq) protein SMG9-like
KO
K18735
protein SMG9
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107008683
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107008683
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Gene cluster
GFIT
Motif
Pfam:
NB-ARC
MMR_HSR1
ABC_tran
AAA_16
AAA_18
RsgA_GTPase
MeaB
DO-GTPase2
AAA_30
FeoB_N
Motif
Other DBs
NCBI-GeneID:
107008683
NCBI-ProteinID:
XP_015063304
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Position
2:59293940..59296795
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AA seq
404 aa
AA seq
DB search
MAGSGGNLSSNQSSVSHQAPKILLAKPGLVSAGKFNRGGPDDDPAAHRPRLPSVGSLNLL
SDTWDFHTDRFLPFLTDNTDFTVVGVIGPPGVGKSTIMNEIYGFDASLPGTLPPFAIETE
ETRAMAKHCTVGIEPRVSSERIILLDTQPVFSPSVLAEMIRPDGSSTIPIISGESLSAEL
AHELLSIQLGVLLASICHIILVVSDGVHDASMWQLMSTVDLLKHGIPDPSSLTLSHRQSS
EKENRDRILDSGGEYMADPVFVHTKLCTEDLAPCNLVQLKKALTQFFCSSSFVRSENHNT
AKESQVSAVSSNIQCAGRESEFLKLFLIPSRNKDDPLKPQYESHISALWNLRDQVLSKRG
PSFSRTVSERDWVKNSAKIWEIIRNSSIIVDYCRTLQSSGMFRR
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagtggtggaaatcttagttccaatcagtcatctgtgtctcatcaagctccc
aaaatcctattagccaaacctggacttgtttccgccggtaagttcaaccgtggtggacct
gacgatgatccagcagctcaccgcccacgtcttccttctgttggatctcttaatcttctc
tctgacacctgggatttccacacggatcgttttctcccgtttctaacggataatacggac
tttacagtagtgggtgtgattggccctcccggggttgggaaatcgacgataatgaacgaa
atttatggttttgatgctagcttgcctggaactcttcctccttttgccatagaaacagaa
gaaacaagggctatggcgaaacattgtacggttggcattgaaccacgggtttcatctgaa
cggattatactgcttgatacacagcctgtttttagcccctcggttttggctgaaatgatt
agaccagatggctcatccaccataccgataataagcggtgaatctttatcagctgagcta
gctcatgaactgttgagcatccagcttggtgttcttcttgcatccatttgtcacattata
ttggtggtatcagatggagtccatgatgctagcatgtggcaactcatgtcaacggttgat
ttgctaaagcatgggatacctgatccatcatctttaaccctttctcatcgtcaaagctct
gagaaagaaaacagagacagaattctagatagtggaggagagtacatggctgatccagtt
tttgtgcatacaaagctatgcactgaagatctagcaccatgtaatcttgttcaactgaag
aaggcactcacacaattcttttgctcgtcatcctttgtgagatctgaaaaccacaacact
gccaaagagagtcaagtttctgctgtttcttccaacattcaatgtgctggtcgagaatct
gaatttttgaaattatttcttattccatccagaaataaggatgatcccttgaagccacag
tatgaaagccacatttcagcattatggaatttgcgggatcaggttttgtcaaagagaggt
ccgtctttctcaaggactgtgtctgagcgtgattgggtaaaaaattctgccaagatatgg
gaaattattaggaattcttccattattgtggactattgcagaactcttcaaagttcaggc
atgtttaggaggtaa
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