Solanum pennellii: 107008765
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Entry
107008765 CDS
T04130
Name
(RefSeq) nuclear pore complex protein NUP98B-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107008765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107008765
03036 Chromosome and associated proteins [BR:
spen03036
]
107008765
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107008765
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107008765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Troponin-I_N
Motif
Other DBs
NCBI-GeneID:
107008765
NCBI-ProteinID:
XP_015063410
LinkDB
All DBs
Position
2:58663601..58671054
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AA seq
910 aa
AA seq
DB search
MSIFLGNTASNFNAATNATSGQTQNASTNSSTLPIFGKKYDFNSVTNEPLVGSRDVNVSD
SSIFGYPRAPAFGVSSNSHCRTARLDSYSFGQPAIFMSGSKGKESTPPFFKSSGFGKSAF
GINQKGSRIASYIATPENNITGPSGGKFQSICGMQAYKDKSQEELRFEDYQLGDKGTLAF
NAATNATSGQTQLIFPGSSFSQTFGKKYDVNSVTNEPLFWSRDANASGFSEFGSLQATSF
GVSSNSHFGTPSFNSYSFGQPAISMSGIKDQTCKAGKESTTPLLQSSGFGKSAFGINQKG
SRTTSYIAAPDIDSTCLFGGRIQSICGMQTYQDKSQEELRFEDYQLGDKGQECGSSFSVS
TAQGFGLINNTRPFISPVLNQSTVDQPFYSHFPSTFTVERAGVDSLSKYSSHIFPPNPSL
LNSCGTRNRVESTASDVSFSPWNNSNQFAPFKPASSSSTASTTPLRNPLSLSTSAPLSPC
SVSPSTYPSLTKPSGPDFYQKNSFSPTPVLTTGGASQSTLCCNCLKQSQPTPAGLSNVSS
TPLAANQNTPLFLGPLQPEITPKVGTTLPITNTSHPTTDGASCSEIGQGVGQQPSMNGQQ
SYFPVIVEVKPSPNMPPAETQPPDQISLEHPYLETSIQYGISSLPVSDNPAPVRRRSSLI
IRHSSLSHHRLPPQKYKPTSDKPKVPFFMDKENATGVLKTEVIIIPRENPRDWVRPTTES
PQGADTSMDRMHDGDKVLHKLKLQSEETHHDNCGDDKDVDGIMPKLQRADYYTVPPIEEL
LSKEKEEAGFCWHVKDFVVGRHGYGSIKFLGETDIRKLDLDSAVRFNHREVIIYMDESKK
PPVGKGLNKPAEITLLNVKCINKSSGKEYRDGPMVNKYKDMLIKKAVEQDAEFVSYDPVE
GQWKFRVSHF
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatatttttgggaaacaccgcttcaaacttcaatgcagcaacgaatgctacatct
ggtcaaacacaaaacgcatctacgaattcgtccactttaccgatatttggaaagaaatat
gactttaatagtgtgaccaatgaacctttggtggggtctagggatgtcaatgtctcggac
tcctccatatttggatatccaagagctcctgcatttggtgtttcaagcaactcacactgt
cgcaccgcaagacttgattcatactcctttggccaaccggcaatatttatgtcagggagc
aaaggaaaagaaagtacaccaccttttttcaagagctctggttttgggaagtcagcattt
ggcattaatcagaaaggaagtagaatagcatcatatattgcaactccagagaacaatatc
acaggacccagtggtggaaaatttcaatccatttgtggaatgcaggcttataaagataaa
agccaagaggagttgaggtttgaggactaccagttaggtgataaaggaacgttagctttt
aatgcagcaacgaatgctacatctggtcaaacacaacttatatttccgggctcatccttt
tcacaaacatttggaaagaaatatgacgttaacagtgtgaccaatgaacctctgttttgg
tccagggatgccaatgcctcaggcttctccgaatttggatctttacaagctacttcattt
ggtgtttcaagcaactcacactttggcaccccaagttttaattcctattcctttggccaa
ccagcaatatccatgtcagggatcaaagatcaaacttgcaaagcaggaaaagaaagtaca
acacctttgctccagagctctggttttggaaagtccgcatttggtattaaccagaaagga
agtagaacaacatcatacattgcagctccagatatagatagcacatgtctctttggtgga
cgaattcaatccatttgtggaatgcagacttatcaagataaaagtcaggaggagttgagg
tttgaggactaccagttaggtgataaaggtcaggaatgtggttcttcatttagtgtttcc
accgcacagggatttggtctcatcaacaacacgaggcctttcatatcaccagtattaaac
caatcaactgttgatcaacctttttattcccattttccaagtacatttacagtggaaaga
gcaggagttgactctctatcaaaatattcttcccatatatttcccccaaacccatcattg
ttgaactcttgtggcactagaaatagagtggagtctactgcctcagatgtttccttctct
ccgtggaacaattcaaatcagtttgcaccttttaaaccagcttccagttcttccactgcc
tccactactccattaaggaacccattgtctttatcaacatctgcccctctatctccatgt
tcagtctcaccttccacatatccttcgttaactaagccatcaggccctgatttttatcag
aagaactctttttctcccactcctgttttaactacaggaggcgcttcacaatccacgtta
tgctgcaactgcctaaagcagtcacagcctactccagcaggactttctaatgtttcaagc
actccacttgctgcgaatcaaaatactcctctgttccttggtcctctgcagccagaaata
actcctaaagttggaacaacactgccaataaccaacacttctcacccaacaacagatggt
gctagttgctcagaaattggacaaggagttggtcagcagccaagtatgaatggccaacag
tcttactttccggtaatcgtggaagtcaagccatcaccaaatatgcctcctgctgaaaca
caacctccggaccaaatctcacttgagcacccgtatttggaaacatccattcaatatgga
atttctagtttacctgtttctgacaaccctgctccggtcagacgaagatcttcgttgata
attcgacattcatctctaagtcatcataggttgccacctcagaaatacaaacctacaagt
gataaaccaaaggtaccctttttcatggataaagaaaacgctactggtgtactaaagaca
gaagtcatcatcattccaagggaaaacccaagggactgggttcgtcctaccacagaatct
ccacaaggggctgatacatctatggacaggatgcatgatggagacaaagttcttcataag
ctcaagttacagtctgaagagacgcatcatgataattgtggcgatgataaggatgtggat
ggcataatgccaaagcttcaacgtgctgattactacacagttcctcctatagaggagttg
ctgtcaaaggagaaggaagaagctggtttttgttggcacgtgaaggactttgtggtagga
agacatgggtatggaagcatcaagttcttgggagaaacagatattcggaagcttgatctt
gattctgctgttcgtttcaaccatcgcgaggtgatcatctatatggatgagagcaagaaa
cccccagttggcaaaggcctcaacaaaccagctgagataactctcctcaatgtcaaatgc
atcaacaaatcaagtgggaaggagtacagagacggaccaatggtcaacaagtacaaagat
atgcttattaagaaagcagtagaacaagatgcagaatttgtttcttatgatccagtggaa
gggcagtggaaatttagggtatcacacttctaa
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