Solanum pennellii: 107008837
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Entry
107008837 CDS
T04130
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107008837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107008837
03019 Messenger RNA biogenesis [BR:
spen03019
]
107008837
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107008837
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107008837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
107008837
NCBI-ProteinID:
XP_015063516
LinkDB
All DBs
Position
2:complement(43292525..43307719)
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AA seq
672 aa
AA seq
DB search
MDDGEGGLNFDFEGGLDTGPTHPTASVPVIQSAGPAPNAPVALVPPGGGAGQGGDGSFVG
NRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNED
IKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVVEVLQKIQNLTSHGYSNRFFQNRNTNYS
TQADKSQIPQVPNVMNQAVKSTATEPPIGQPHQPHQQQVQQPQHQGAPTQTQTLPGTQQN
QAAIPLPQGPSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSIN
RTRHFQGLAKMTSRIGGAAKGGNWKHEHGTAHYGRNFSVKWLKLCELSFQKTRHLRNPYN
ENLPVKISRDCQELEISVGEQLASLLYVEPDSELMAISLAAESKREEERAKGVNPDNGNE
NPDIVPFEDNEEEEEEESEEEDEEDEGFGQALGPAALGRGRGRGIVWPPLVPFRGARPFP
GMRGFPPGMMSDGFSYGSMTPDGFPMPDPYGMGGRPFGPFGPRFPGDMMFHSRPPAAGGF
GMMMGPARPPFMGGMGPGAPGPPRGGRPMGMHPSFTPPPPPPSQNPRVKKDQRAPFNERN
DRFSSGPDQGRGQETAGSVVGPDEGVHYPQTENSFRNDESESEDEAPRRSRHGDGKKKKN
SMDGDATTGTEK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatgacggagaaggaggactaaactttgattttgaaggtggcttagatacagggcca
acacacccaactgcatctgtaccagtaatacaatcggccggtcccgccccaaatgctcct
gttgccttagttcctccaggcggcggtgcggggcaaggaggtgatggttcatttgttggt
aatcgtagaagtttcaggcagactgtttgtaggcattggctacggtcgttgtgtatgaag
ggtgatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttc
tttagactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggat
attaaagaatgtaacatgtataaattaggattttgtccgaatggtcctgattgccgatat
agacatgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcag
aatttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattca
actcaggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaa
tctacagcaacagaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaa
cagcctcaacatcagggggccccaactcaaacacaaacccttcccggcacccagcaaaat
caggctgcaataccccttcctcaaggaccatctaggtactttatagttaaaagctgcaac
cgtgagaatcttgaattgtcagtacaacaaggagtttgggcaactcaacgaagcaatgag
gctaaactaaatgaagctttcgactctgtggaaaatgtcattctaattttttcaatcaat
cggaccaggcattttcagggtctcgcaaaaatgacatctagaattggtggtgctgctaaa
ggaggaaattggaagcatgaacatggaactgcacattatggacggaatttttcagtgaaa
tggttaaagctgtgtgaactgtccttccagaaaactcgtcatttgaggaatccatacaat
gagaacttacctgtgaagattagcagagattgtcaagaattagagatctctgttggtgag
cagttggcttctttgctctatgtggaaccagacagtgaacttatggcaatctcacttgct
gcagaatccaagcgagaggaggaaagagcaaagggagtaaaccctgataatgggaatgag
aacccagatatcgtaccttttgaagacaatgaagaagaggaagaagaagaaagtgaagag
gaggatgaggaggatgagggctttggccaagctttaggaccagctgctttgggcagagga
aggggtaggggaatcgtatggcctcctctagttccttttcgtggagccaggcctttccct
gggatgcggggcttccccccaggcatgatgagtgatggattttcttatggatcaatgaca
cctgatggttttcctatgcctgatccttatggaatgggtggccgaccttttggaccattt
ggccctcgattccctggtgatatgatgtttcacagccgtcctccagctgctggtggattt
gggatgatgatgggtccagcaaggccccctttcatgggtggaatgggtcctggagcaccc
ggcccacccagaggtggtcgaccaatgggaatgcatccatcatttacaccacccccacca
ccgccctctcaaaatcctcgggtcaaaaaggatcagcgagctccttttaatgaaaggaac
gatagattcagttcaggtccagaccaaggtaggggtcaagagactgcaggctcagttgtt
ggaccagatgaaggagtacattatccacaaactgaaaacagctttagaaatgatgaaagc
gagagcgaggatgaagcccctagaaggtccagacatggtgatggaaagaaaaagaagaat
agcatggatggagatgctacaactggcacagaaaagtaa
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