Solanum pennellii: 107009135
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Entry
107009135 CDS
T04130
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
spen
Solanum pennellii
Pathway
spen03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
107009135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107009135
03036 Chromosome and associated proteins [BR:
spen03036
]
107009135
Enzymes [BR:
spen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107009135
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107009135
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
107009135
Noncanonical PRC1 (PRC1.1)
107009135
Noncanonical PRC1 (PRC1.3/1.5)
107009135
Noncanonical PRC1 (PRC1.6)
107009135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-UDP
zf-rbx1
zf-RING_6
RAWUL
zf-Nse
TRAF3_RING
zf-C3HC4_5
ZNF512_C2HC
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
107009135
NCBI-ProteinID:
XP_015063895
LinkDB
All DBs
Position
2:complement(46285847..46294345)
Genome browser
AA seq
449 aa
AA seq
DB search
MPAQKRPYETSPTPPPPDEKDDDSLQGNQNHDEDADDSGGEDSDGTTCSSGGEKDEFITV
RLSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSL
RDDPNYDALIAFLYPDIDKFEEEEFAFHEEDKALNKQIQASIAQTSQRQSEALGRKRSAR
AAAFTRRSQGNYRNLRGRRNYQGAEHHISDEEEDGNHDGKDSSSADERSIEVKPKRQKKR
AGRPSQASAASEENDAETNQESFGACSGLIRCSEILAWGKGGMRSNNRHGGLGGGIGKVS
RNSRVSKLIASLSRSDEYEGKLDARLMLVSFSEEDIPSLQRPYLSCQPTMEVKHLRQYVA
QQTSIEVAEIDIVLIKEKNPTDNPSSSDIMAISKPIVEDPSKAEIQTVEEHQTLGEIQET
FGLNQRNLILAYQRKAKNGTDHDEVKVTM
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcacagaagcgtccgtacgaaacttctcctactcctccgccaccggacgagaag
gacgatgattcgttacaaggtaatcaaaatcacgacgaagatgccgatgacagcggcggc
gaagattcggatggaactacttgttcgagcggcggggagaaagacgaatttatcactgtg
agactttcagaaattcgcaaagaagtacagtgtcctatatgtttaggcatcatacggaag
accagaacagttatggaatgtttgcatcgattttgcagagaatgcattgacaagtctatg
cgaatggggaacaatgagtgtcctgcttgtcgtacccactgtgctagtcgccgttctctg
agagatgatccgaactatgatgctctaattgcatttctatatccagatattgataaattt
gaggaggaggaatttgcttttcatgaagaggataaagctttaaataagcagatacaagct
tcaatcgcacagacgtcacagcgacaatccgaagcactgggaaggaaacggtctgcaaga
gcagcagcttttacgaggagatctcagggaaactatcggaatttaaggggaagaagaaat
tatcagggtgctgaacaccatatatctgatgaggaagaagatggtaatcatgatggcaag
gattcttcctctgctgatgagcgctcgatagaagtcaaaccaaagcgacagaaaaagagg
gcaggacggccttctcaggcctcagcagccagtgaagaaaatgatgcagaaacaaaccaa
gaatcatttggtgcatgtagtggacttattcgctgttcagagattcttgcctggggaaaa
ggtggcatgcgaagtaacaacaggcatgggggtcttggtggaggcattggcaaagtctcc
aggaacagcagagtctcgaagctaattgcttctctatctcgttcagatgaatatgaaggg
aagttggatgccagacttatgcttgtttccttttccgaggaggatataccaagtttgcaa
cgaccttaccttagttgccagccaactatggaagttaaacatttaagacagtatgtagct
cagcagacttccatagaagtcgcggaaattgacatagtgctgataaaagagaagaacccc
actgacaacccttcaagttctgatatcatggccatttccaaacccattgttgaagatcct
tctaaagcagaaatccagactgtggaagagcatcagacattgggagaaatccaagaaaca
tttggtttgaaccagcgtaatctgatcttggcataccaacgaaaagcaaagaatgggaca
gaccatgatgaagtgaaggtgacaatgtaa
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