Solanum pennellii: 107009174
Help
Entry
107009174 CDS
T04130
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107009174
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107009174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NikR_C
Motif
Other DBs
NCBI-GeneID:
107009174
NCBI-ProteinID:
XP_015063939
LinkDB
All DBs
Position
2:complement(48728015..48729846)
Genome browser
AA seq
402 aa
AA seq
DB search
MAKSISSLQILSWLLIICSFFTIVASKSSDKDETKSVHDFFPSYDPQPHKNGLLNVIDSC
WRWKGDWSSNRKALADCAIGFGSSTIGGKYGDIYIVNDSSDDPINPKPGTLRYGAIQSEP
LWIIFKRDMVLTLENELMVNSYKTIDGRGAKVEISNGPCITLDYVTNVIIHGISIHDCKP
GKKGMVRSSPEHVGERLGSDGDAISVFKSSNVWIDHCYLARATDGLLDVIHASTAVTISN
NYFTEHDKVMLLGHNDEYTADRNMKVTVVYNHFGRELVQRMPRVRHGYAHVANNYYDQWL
MYAIGGSADPTIFSEGNYFIAPDKAYNKEVTKRETEEKGWKSWKWRSSNDMFMNGAYFLP
SGYGSIAPKYTRGQSFIVAHGAFTPSLTSNAGPLQCVVNEPC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcaattagttccctccaaatactttcatggcttctaattatttgttctttt
ttcaccatagtagctagtaaatcaagtgataaagatgaaactaaatcagtacatgatttt
tttccaagttatgatcctcagcctcacaaaaacggtctcctcaatgtcatcgattcgtgt
tggagatggaaaggcgattggtcatccaatcggaaggctttagcggattgtgcaataggc
tttggaagtagtaccataggtggtaaatatggtgacatttatattgtcaatgactcttct
gatgaccctataaatcctaaaccaggcacacttaggtatggtgcaattcagtccgagcca
ctttggataattttcaaaagggacatggtacttacacttgaaaatgaacttatggtgaat
agttataagactatagatggcagaggagcaaaagtggaaatctctaatggtccatgtatc
acattggactatgtaacaaatgttattattcatgggattagtattcatgattgtaagcct
ggtaaaaagggtatggttaggagtagtcctgaacatgttggtgaaagattaggctctgat
ggtgatgctataagtgtgtttaaatcgtccaatgtgtggattgatcattgctatcttgct
cgtgcaacggatggactactcgatgttattcatgcttcaactgcagtaaccatttccaac
aattacttcactgagcatgacaaagttatgttattgggacacaacgatgaatatactgcg
gacagaaacatgaaagtcactgtagtttacaaccattttggccgcgaattagttcagaga
atgccaagggttaggcatgggtatgctcatgtggccaacaactattatgatcaatggtta
atgtatgccattggtgggagtgcagatccaacaatattcagtgaaggaaattatttcatt
gctcctgacaaagcttacaataaagaggtcaccaagagggagactgaagaaaaaggatgg
aagagttggaaatggagatcctcgaatgatatgtttatgaatggagcttattttcttcca
tctggatatggaagtattgctccaaaatacacgagaggacaatcgttcattgttgctcat
ggagcatttactccctctttaacttccaatgctggtcctcttcaatgtgttgtcaatgaa
ccttgctaa
DBGET
integrated database retrieval system
