Solanum pennellii: 107009295
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Entry
107009295 CDS
T04130
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP98A-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107009295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107009295
03036 Chromosome and associated proteins [BR:
spen03036
]
107009295
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107009295
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107009295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
107009295
NCBI-ProteinID:
XP_027770888
LinkDB
All DBs
Position
2:complement(56778781..56788154)
Genome browser
AA seq
1017 aa
AA seq
DB search
MGSSTLPTFGKKYDFNSVANEPLVGSMDVNVSDSSIIGYPRGPAFGVSSNSHFGTPRLDS
YSFGQPEVSMSGSKGKGSTPPLFKSSGFGKSTFGINQKGSRIASYTATPDNDITGSQIQS
ICGMLTYKDKSQEELRFEDYQLGDKGPLDYNAATNATSGQTQNISMGSSTLPAFGKKYDF
NSVANEPLVWSRDVNVSDSSVLGYPRGPAFGVSNNSHFGTPRLDSYSFGQPALSISGSKA
QVFNLDQICKPGKESTPFFKSSSFGKSTFGINQNGSRIASYTATPDTDITGSRIQSICGM
LTYKDKSQEELRFEDYQLGDKGTLAFNTTTNAISGLSQNIYAGSSTSQTFGKKYDVNRVA
NEPLLWPGDSNVTDFCAFGPLKASSFGVSSNSHFGTPSFNSYSFGQPAISMSGIKGKEST
LLQNSGFGKFAVGNNQKGSRIASYIATPDIDNIFLDGGGIQSICGMQIYQHKSQEELRFE
DYQLGDKGQKCGSSFGVSGTQGFGVIDKTRPFISPVFNQSTINQPVYSHFPSTFAVERAG
IDSLSNENSTPSSKPQQQSISHIFPPNTSLLNSYGTGSRVQSTASNVSFSSWTHSSPFAP
FNPASSSSTTSTFSTLRNPWSLSTSTPLSPCSVSPSSYPLLAVPSGPDFDQKNYFPPTPV
LTTGGTPLSTFCLNCLKQSQPTPPGLSNVSSAPLATSQNTPRFSVPLQPEMTPKVGKTLP
ITKVSRPSTGASFSEIGQGFGQQPSVNGQQSYFPRIMEVKPSPIMPAAETQPSVQISVEH
PFLETSIRYGISCLPVLFFMDKENASGVLRTEVIVIPGDQVRPTAESPLGADSSMDRMHD
RDKVGDKPKLEPEEMHHDNCGDDKDVDGNMPKLQRADYYTVPSMEELLSKEKEEADFCCH
VKDFVIGRHGYGSIKFLGETDVRKLDLDSAIQFNHREVVIYMDESKKPPVGQGLNKPAEI
TLLNVRCINNSTGKEYRDGPMVNKYRDMLIKKQXELDAEFVSYDPVEGQWKFRVSHL
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgtccactttaccgacgtttggaaagaaatatgactttaatagtgtggccaat
gaacctttggtgggttccatggatgtcaatgtctcagactcctccataattggatatcca
agaggtcctgcatttggtgtttcaagcaactcacactttggcaccccaagacttgattca
tactcctttggccaaccggaagtatctatgtcagggagcaaaggaaaaggaagtacacca
cctcttttcaagagctctggttttggcaagtcaacttttggcattaatcaaaaaggaagt
agaatagcatcatatactgcaactcctgataacgatatcacaggatcccaaattcaatct
atttgtggaatgctgacttataaagataaaagccaggaggagttgaggtttgaggactac
cagttaggtgataaaggaccattagactataatgcagcaacgaatgctacatctggtcaa
acacaaaacatatctatgggctcgtccactttaccggcatttggaaagaaatatgacttt
aatagtgtggccaatgaacctctggtgtggtccagagatgtcaatgtctcagactcctcc
gtacttggatatccaagaggtcctgcatttggtgtttcaaacaactcacactttggcacc
ccaagacttgattcatactcctttggccaaccagcactatccatttcagggagcaaagct
caagtgttcaatcttgatcaaatttgcaaaccaggaaaagaaagtacaccttttttcaag
agctctagttttggaaagtcaacatttggcattaatcaaaatggaagtagaatagcatca
tatactgcaactcctgataccgatatcacaggatcccgaattcaatccatttgtggaatg
ctgacttataaagataaaagccaggaggagttgaggtttgaggactaccagttaggtgat
aaaggaacattagcctttaatacaacaacgaatgctatatctggtctatcacaaaacata
tacgcgggctcatccacttcacagacgtttggaaaaaaatatgacgttaacagggtggct
aatgaacctctgttgtggcccggagattccaatgtcacagacttctgtgcatttggacct
ctaaaagcttcttcattcggtgtttcaagcaactcacactttggcaccccaagttttaat
tcctattcctttggccaaccagctatatccatgtcagggatcaaaggaaaagaaagtact
ttgctccagaactctggttttggaaagttcgcagttggtaataatcagaaaggaagtaga
atagcatcatacattgcaactccagatatagataacatatttctcgatggtggaggaatt
caatccatttgtggaatgcagatttatcaacataaaagccaggaggagttgaggtttgag
gactaccagttaggtgataaaggtcagaaatgtggttcttcatttggtgtttccggcact
caagggtttggtgtcatcgacaaaacgaggccatttatatcaccagtatttaaccaatca
actattaatcaacctgtttattcccattttccaagtacatttgcagtggaaagagcaggg
attgactctctatcaaatgaaaattctaccccatcttcgaagccacagcagcagtccatt
tcccatatatttcccccaaacacatcattgttaaactcttatggcactggaagtagagtg
caatctactgcctcaaatgtttctttttcttcgtggacccattcgagtccatttgcacct
tttaatccagcttccagttcttccactacctccaccttttctacattaaggaatccgtgg
tctttatcaacatctacccctctatctccatgttcagtttcaccttcttcatatcctttg
ttagcagtaccatcaggccctgattttgatcaaaagaactattttcctcccacacctgtt
ttaactacaggaggcactccactatccacattttgcttgaactgcctaaagcagtcacag
cctactccaccaggactttctaatgtttcaagcgctccacttgcgacgagtcaaaatact
cctcggttctctgttcctctgcagcccgaaatgactccaaaagttggaaaaacacttcca
ataaccaaggtttctcgcccatcaacaggtgctagtttctcagaaattggacaaggattt
ggtcagcagccaagtgtcaatggccaacagtcttactttccgagaatcatggaagtcaag
ccatcaccaattatgcctgctgctgaaacacaaccttcagtccaaatctcagttgagcac
ccgtttttggaaacatccatccggtatggaatttcctgtttacctgtactctttttcatg
gataaagaaaacgcttctggtgtactaaggacagaagtcatcgtcattccaggggaccag
gttcgtcctactgcagaatctccactgggggctgattcatctatggacaggatgcatgac
agagacaaagttggtgacaagcccaagttagagcctgaagagatgcatcatgataattgt
ggcgatgataaggatgtggatggcaatatgccaaagcttcaacgtgctgattactacacc
gttccttctatggaggagttgctatccaaggagaaggaagaagctgatttttgttgccac
gtgaaggactttgtgataggaagacatgggtatggaagcatcaagttcttgggagaaaca
gatgtccggaagcttgaccttgattctgctatccagttcaatcatcgtgaggttgttatc
tatatggatgagagcaagaagcctccagttggacaaggcctcaacaagccagctgagata
actctccttaatgtcagatgcatcaacaactcgactgggaaggagtacagagatggacca
atggtcaacaaatacagagatatgcttattaagaagcagnttgagcttgatgcagaattt
gtttcttatgatccagttgaagggcagtggaaatttagggtgtcacacttgtaa
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