Solanum pennellii: 107009438
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Entry
107009438 CDS
T04130
Name
(RefSeq) probable pectate lyase P59
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107009438
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107009438
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107009438
NCBI-ProteinID:
XP_015064262
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Position
2:complement(40825747..40827759)
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AA seq
443 aa
AA seq
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MTKSLFIMFFVLGAIIPAFNAHIGDFDEVWRRRAEEAIKFTHETYESEPANITLSFNQKT
RHTVKELSTVVSKNETVRRALGTKKYEGPCTVTNPIDKCWRCDPNWADNRKKLVECSMGF
GYKTTGGRDGEFYVVTDPSDDYTTPKPGTLRHAVIQKVPLWIIFEKSMKIKLHQELIMQG
DKTIDGRGANVHITGGAGIMIQYTKNVIIHGLHIHDIVEGSGGMVRDAVDHIGLRTKSDG
DGISIFGSSNIWIDHMSMENCYDGLIDAVEGSTGITISNGHYTDHNEVMLFGASDSSSID
QKMQITLAFNHFGKRLVQRMPRCRWGYIHVVNNDYTHWNMYAIGGSKNPTIISQGNRFIA
PPDIFKKQITKREYSPESVWMQWTWRSEGDLFMNGAYFVQAGDPDWSKKHQNLYDGIAPA
PADQVTWITRFAGTLNCKVGLPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagtccctatttattatgttttttgtattaggtgcaataattcctgccttcaat
gctcatattggagattttgatgaagtgtggaggaggagagccgaggaagcaataaagttc
actcatgaaacgtatgagagcgagcctgccaatatcaccttatcatttaaccagaaaact
cgccatactgtgaaggaattaagtacagtagtatccaagaatgaaacagttagaagggca
ctaggaaccaaaaaatacgaagggccttgcacggtcacaaatccaattgataagtgctgg
agatgtgacccaaattgggctgacaacaggaagaagctagtagaatgttctatgggcttt
gggtacaagaccacaggtgggagggacggcgaattttacgtcgtcacggacccatcggat
gattataccactccaaaacccggaaccctccgtcatgctgttatccaaaaggtgccattg
tggatcatttttgagaaaagcatgaagatcaagcttcaccaggaactaatcatgcagggt
gacaaaactatcgatggtcgtggtgctaatgttcacattactggtggtgctggtattatg
atacagtacacgaaaaacgtgatcatccacggattacacattcacgatatagtcgaaggg
agtggtggtatggttagagatgcagtggaccacattggtctccgaacaaagagtgacgga
gatggtatttccatatttggttcgtctaatatctggatcgatcatatgtcgatggagaat
tgctacgatgggctcattgatgctgtggagggatccactggtatcaccatttctaatggc
cattacacagatcataatgaagttatgttgtttggtgcaagtgatagttcttcaattgat
caaaaaatgcaaatcacactagcattcaatcatttcggaaagagattggtacagaggatg
cctagatgcagatggggatacattcatgtcgtcaacaatgattatactcattggaatatg
tatgctattggtggtagtaaaaatcccaccatcattagccagggtaatcgtttcattgct
cctcctgatatcttcaagaagcagattacaaagagggaatactccccagaatcagtgtgg
atgcagtggacatggagatcagagggagatttattcatgaacggagcatactttgttcaa
gctggtgatcctgattggtcaaagaaacatcaaaatctttacgatggcattgcacctgca
ccagcagatcaagtcacatggatcacaaggtttgcagggacacttaattgcaaggtggga
ctgccttgttag
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