Solanum pennellii: 107009670
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Entry
107009670 CDS
T04130
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
spen
Solanum pennellii
Pathway
spen04120
Ubiquitin mediated proteolysis
spen04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107009670
04120 Ubiquitin mediated proteolysis
107009670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107009670
Enzymes [BR:
spen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107009670
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
U-box type E3
107009670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DUF2730
Motif
Other DBs
NCBI-GeneID:
107009670
NCBI-ProteinID:
XP_015064494
UniProt:
A0ABM1G190
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All DBs
Position
2:complement(54773367..54783231)
Genome browser
AA seq
1040 aa
AA seq
DB search
MATSKPQRTPAEIEDIILRKILLVSLVDSMENDTRVVYLEMTAAEILSEGKGLRLSRDLM
ERVLIDRLSGNFVSAEPPFQYLVNCYRRAHEEGKKIASMKDKNVRSEMELVVKQVKRLAV
SYCRIHLGNPDMFPNWDMAPANVSPLLPLLFSEVSSSVDVFGGSSGSGGVSSPPGFLDEL
LKDADFDSMDPILKQLYEDLRGTVLKVSALGNFQQPLRALLFLVKYPVGAKCLVNHPWWI
PNSVYMNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSESATRRPADLLSSFTT
IKTVMNNLYDGLAEVLMSLLKNSTIRENVLGYLAAVINKNSSRAQLQVDPLSCASSGMFV
NLSAVMLRLCEPFLDANLTKRDKIDPQYVFSSTRLELRGLTAMHASSEEVSDWINQNNPG
KVDVAKEGSDGENRLLASQEATSSGNDSGGPSILHYNNPISSSSEKAKYPFICECFFMTA
RVLNLGLLKAFSDFKHLVQDISRSEDNLSTMKTMLEQTPSPQLQQEISRLEKDLESYSQE
KLCYEAQILRDGGLLQRALSFYRLMVVWLVGLVGGFKMPLPSPCPMEFASMPEHFVEDAM
ELLIFASRIPRALDGVLLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRRSGSTA
TSTLFEGHQLSLEYLVKNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRN
AWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQER
QERTRLFHSQENIIRIDMKLANEDVSLLAFTSEQITVPFLLPEMVERVASMLNYFLLQLV
GPQRKSLSLKDPEKYEFRPKELLKQIVKIYVHLARGDKEKIFPAAIIRDGRSYSDQIFSA
AADVLRRIGEDMRIIQEFIDLGAKAKIAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVI
LPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDTELKAKIEEFIRSHELKKPGED
LNLQHTKTTIQTTDTSNLIE
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttctaaaccacagaggacgccggcggagatcgaggatataattcttcggaaa
attttacttgtatctctagttgattcaatggaaaatgatacacgcgttgtgtatttagag
atgacggcggccgagattttgagcgagggcaaaggattaaggttgtctagggatttgatg
gagagggttttaatcgatcgactttctggtaattttgtgtccgcggaaccaccttttcag
tatttggtcaactgttaccgtcgggctcatgaagaagggaagaaaattgcgtcgatgaag
gataagaatgttaggtctgagatggaattggtggttaagcaagtaaagagacttgctgta
tcatactgtaggatacatttaggaaatcctgatatgtttcccaattgggatatggcacca
gcaaatgtatctccgttgcttcctttgttgttttctgaggtttcaagttctgtggatgtg
tttggtgggagtagtggtagtggaggagtgtcgagtccacctggatttttggatgagtta
ttaaaggatgcggattttgatagtatggacccaatactgaagcagttgtatgaagatttg
agagggaccgtgctaaaggtctcagctttgggtaattttcagcagcctcttagagcttta
ttatttttggttaagtatccagtaggtgccaagtgtctggtgaatcatccttggtggatt
ccaaatagtgtttatatgaatggaagagttatcgagatgacaagcattttgggtcctttc
tttcatgtcagtgctttacctgatcatgcaatcttcaagagtcagccggatgttggccag
cagtgtttctcggaatcggctacacgtcgtcctgctgatctcttgtcttctttcacaaca
atcaaaactgttatgaataacttgtatgatggcttggcagaagtccttatgtctcttctg
aaaaattcaaccattcgtgaaaatgtccttggatatcttgcagcagttataaacaaaaat
tcctcaagggcacagttgcaggttgatccattatcttgtgctagttcaggaatgtttgtc
aatctcagtgccgttatgcttcggctctgtgaacctttcttagatgccaatttgacaaaa
cgggacaagattgatccccaatatgtgttttctagcacccgtctggaactgagggggttg
actgctatgcatgcatcatcagaagaagtctctgattggataaatcaaaataatcctggg
aaagttgacgtcgctaaagaaggcagcgatggagaaaatcggttgttggcatctcaggaa
gccacaagctctgggaatgattctggtggaccttcaattctccactataacaacccaata
tcaagtagtagtgagaaagctaaataccccttcatatgtgaatgcttcttcatgactgca
cgggtgctcaacctgggcctcctaaaagcattttcagattttaagcatcttgttcaggac
atttcaagatccgaagataatttgtctaccatgaaaaccatgctagaacaaacaccctcg
ccacagttgcagcaggaaatatctcgcttggaaaaagatcttgaatcgtattcacaggag
aaattatgctatgaagcccaaatattgagggatggagggcttctacagcgtgcattatcc
ttctacaggttgatggttgtttggttggtcgggcttgttggtggttttaagatgccttta
ccttccccttgccctatggagtttgcatctatgcctgagcacttcgttgaagatgccatg
gagctgctaatttttgcttctcgaattcccagagctttggatggtgtcttgctggatgac
ttcatgaatttcattatcatgttcatggcaagtccagaatatatcagaaacccttacctt
agagcgaagatggttgaagtcctgaactgttggatgccccgcagaagcggctctactgca
acgtctactttgtttgaggggcatcaactctctctggagtaccttgtgaaaaatcttttg
aagctttatgttgacattgaatttacaggttcacacacacagttctatgataaatttaat
atccgccacaacattgctgaactacttgaatatctttggcaagttccaagtcaccggaat
gcatggagacagattgccaaggaggaggagaagggtgtttatttgaatttcttgaacttc
ttaattaatgatagcatttatcttctcgatgaaagtcttaataaaattcttgaactaaaa
gagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagctcaagaaagg
caggagagaacccgtctgttccattcacaagagaatataattcgaattgatatgaagctg
gcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttctt
cttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtg
ggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaa
gagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaa
atctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgct
gcagctgatgtccttagaagaattggtgaagatatgaggatcatacaagagttcatcgac
cttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttgga
gacattcccgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcatt
cttccttcttcgaggataacagttgaccggcctgtcattcagcggcaccttcttagtgat
agtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgag
ttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggat
ttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgag
tag
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