Solanum pennellii: 107009736
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Entry
107009736 CDS
T04130
Name
(RefSeq) replication factor C subunit 3-like isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
spen
Solanum pennellii
Pathway
spen03030
DNA replication
spen03410
Base excision repair
spen03420
Nucleotide excision repair
spen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107009736
03410 Base excision repair
107009736
03420 Nucleotide excision repair
107009736
03430 Mismatch repair
107009736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spen03032
]
107009736
03036 Chromosome and associated proteins [BR:
spen03036
]
107009736
03400 DNA repair and recombination proteins [BR:
spen03400
]
107009736
DNA replication proteins [BR:
spen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107009736
DNA Replication Termination Factors
ELG1-RFC complex
107009736
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
107009736
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107009736
Check point factors
HRAD17(Rad24)-RFC complex
107009736
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA
Rad17
AAA_lid_RFC1
Sigma54_activ_2
Mg_chelatase
AAA_16
AAA_5
AAA_23
AAA_22
ABC_tran
RuvB_N
RsgA_GTPase
DUF815
AAA_2
AAA_29
nSTAND6
nSTAND_NTPase5
AAA_24
T2SSE
Cytidylate_kin2
Motif
Other DBs
NCBI-GeneID:
107009736
NCBI-ProteinID:
XP_015064589
UniProt:
A0ABM1G1H0
LinkDB
All DBs
Position
1:22032716..22046218
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKYRPKTLDKVIVHRDVAQNLRKLVSEGDCPHLLFYGPSGSGKKTLIMALLRQIFG
PSADKVKVENKIWKVDAGTRTIDVELTTLSSSHHVELNPSDAGFQDRYVVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSR
CLNVRINAPMEEEIVNVLEFIAKKEGLQFPQGFAARIVEKSNRNLRRAILTFESCRVQQY
PFINNQTTPPMDWEQYVSEIVSDIMKEQSPKRLFEVRGKLYELLTNCIPPEIILKRLLFE
LLKKLDSELKHEVSNWAAHYEHRMRLGQKAIFHLEAFVAKFMSIYKSFLISTFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgggttgacaagtaccgccctaaaacattagataaagttattgtacaccgggat
gttgctcaaaatcttcgtaaactggtctcagagggagattgtcctcatctcctcttttac
ggcccttctggttcaggaaagaaaactctcattatggcacttcttagacagatttttggt
ccaagtgctgacaaggtgaaggttgagaacaagatttggaaagttgatgctggtactcgg
acaattgatgtggagctcacaacattgtcaagcagtcaccatgtggaattaaatccaagt
gatgccggatttcaggacagatacgttgttcaagagataatcaaagaaatggccaagaat
agaccaattgacacaaaagggaaaaaggggtttaaagttttagtgctaaatgaagttgac
aagctctcaagagaagcacaacattctcttcgaagaacaatggagaagtacagtgcatca
tgtcgcctgattctttgctccaacagttcttcaaaggtcactgaagcagttcgctcacga
tgccttaatgtgcgaataaatgcaccaatggaggaagagattgttaatgttttagaattt
attgccaaaaaggaaggacttcaatttccacagggttttgcagcccgcattgtggaaaag
tcaaataggaatctgaggagggcaattttgacatttgagtcttgccgtgttcaacagtat
ccctttataaacaaccaaactacacctccaatggactgggagcaatatgtttcagaaatt
gtatcagacataatgaaagagcagagccctaaaaggttatttgaggtaagaggaaagtta
tatgagctactaactaattgtattccccctgaaattattttgaagaggctacttttcgaa
ctattgaagaaattggattcagagttgaagcatgaggtgtccaactgggctgctcattat
gagcatagaatgcgccttggacagaaggctatatttcatcttgaagcatttgtggccaaa
ttcatgagcatctacaagagtttccttatttcaacatttggctaa
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