Solanum pennellii: 107011170
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Entry
107011170 CDS
T04130
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
spen
Solanum pennellii
Pathway
spen03420
Nucleotide excision repair
spen04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107011170
09124 Replication and repair
03420 Nucleotide excision repair
107011170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107011170
03400 DNA repair and recombination proteins [BR:
spen03400
]
107011170
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
107011170
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
107011170
TCR (transcription coupled repair) factors
Cul4-CSA complex
107011170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
107011170
NCBI-ProteinID:
XP_015066042
LinkDB
All DBs
Position
2:complement(17054790..17076208)
Genome browser
AA seq
1095 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD
VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP
TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE
TIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIE
LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFC
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT
FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSST
SRDLKNEWFAPAGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL
DINPIGENPNYSNIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY
LLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYS
SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA
RRISHQEQTRTFALCSVKYTQSNADDPEMHFVRLLDDQTFEFISTYPLDQFEYGCSILSC
SFSDDSNVYYCIGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
FKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEV
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ
TNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVP
VEELMKRVEELTRLH
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtatggaactacgtggttacggctcacaaaccaacaaatgttacacattcctgt
gttggcaatttcaccggtcctcaagagctcaatcttatcattgcgaaatgtactcgaatc
gagattcatttactcactccccaaggtttacagtgcatttgtctgcagcctatgttagat
gtgccaatatatgggagaatcgcgacacttgagcttttccgtcctcacggtgaaacacaa
gatcttctcttcatcgcaacagagcgatataaattctgtgtccttcaatgggatactgag
gcatctgaagttatcacaagagcaatgggggatgtgtcagaccgaataggccgtcccaca
gataatggtcagattggtataattgatccagattgcagattgatcgggctacatctttat
gatggactatttaaggttattccatttgataacaaaggccaactgaaggaagcttttaac
atcaggctcgaggagcttcaagttttagatattaaattcttgtatggttgcccaaagcct
acaattgttgttctatatcaggataacaaggatgcccgacatgtcaaaacatatgaggtg
tccttgaaagacaaagattttattgaagggccatgggctcaaaataatcttgataatgga
gcttctttgctaataccagtacctccgccactgtgtggtgtattgattattggagaagaa
accatcgtttattgcagcgcttcagcttttaaggctatcccaattagaccttctatcaca
agagcatatgggcgggttgatgctgatggttctcgatatttgcttggggatcataatggg
cttcttcacctacttgtaatcactcatgagaaggagaaagttaccggactcaaaattgag
ctactgggggaaacttctattgcatcaaccatatcatacctagacaatgcttttgtcttc
attggctcaagctacggagattcacagcttgtaaagctcaatctccagcctgacaccaaa
ggttcttatgtggaagttctagagagatatgtcaatttaggacctatcgtggacttctgt
gttgttgatctggaaaggcaaggtcaaggtcaggttgtaacttgctctggagcctataag
gatggatcacttcgtattgttcgaaatggaattggcataaatgaacaggcgtctgtggaa
ctacaagggatcaaaggaatgtggtctcttagatctgctactgatgatccatatgacaca
ttcttggttgttagcttcattagtgagacacgcgttttggctatgaaccttgaggatgag
ctggaagaaactgagatagaaggcttcaattctcaagtccagaccttgttttgtcatgat
gctgtatacaaccagcttgttcaggttacttcaaattctgttagactggtcagttctacg
tctagagatctgaaaaacgagtggtttgccccagccggctactcggtcaatgttgcaact
gctaatgccactcaggtactattggctactgggggtggccatctggtatacctagaaatt
ggtgatggggtgttgaatgaagtaaaatatgccaagttggattatgatatctcgtgcctg
gacataaatccaattggtgaaaatccgaactacagtaacattgcagcagttggaatgtgg
acagacataagtgtcaggatatattcacttcctgacttgaatctcattacaaaggaacag
ctaggaggggagataattcctcgttctgttctgatgtgttccttcgaagggatatcttat
ctactatgtgctttgggagatggccatctcttgaattttgtattgagcatgagtactggt
gagctgacagataggaaaaaagtttctcttgggacacagcccataacacttcgtacattc
tcatctaaagatacaacacatgtctttgctgcctccgataggccaacagttatttacagc
agtaacaagaagctgctttatagcaatgtaaatctaaaagaagttagtcatatgtgccca
ttcaatgttgcagcttttccagacagccttgcaatcgctaaagaaggtgagttaacaatt
ggcactattgatgaaattcaaaagcttcacattcgttcaataccccttggggagcatgca
cgtcgcatcagccatcaagagcagacccggacatttgctctatgcagtgtgaagtatact
cagtcaaatgcagatgatcctgaaatgcattttgtccgcctgttggatgatcagacattt
gagttcatatcaacatatccccttgaccaatttgaatatggctgttccatactaagctgc
tccttttctgatgatagtaatgtgtattattgcattggaactgcatatgtgatgccagag
gaaaatgaacctactaagggccgaattttagtttttatagttgaagatggaaagctccag
ctaattgctgagaaggaaactaagggagctgtctactctctaaatgccttcaatgggaaa
ctgcttgctgcaatcaatcagaagattcaattgtacaagtgggcttcgcgtgaggatggt
ggcagccgagaattgcagacagaatgtggacaccatggtcatatattagctctttatgtt
caaacgcgtggggatttcattgttgttggtgatttgatgaaatccatttctctgctgatt
ttcaagcatgaagagggtgctatagaggagcgagccagagactataatgcaaattggatg
tcagctgttgagattctcgatgatgacatttatcttggtgctgagaataactttaacctt
ttcacggtcaggaaaaatagtgaaggtgctacagatgaggagcgcagccgtcttgaagtg
gttggtgaataccaccttggcgaatttgttaataggtttagacatggttcacttgtcatg
cgactaccagattcagatgttgggcagatacccaccgtcatatttggcacagtgaatggt
gttataggggtgattgcatcactacctcatgatcaatatttatttttggagaagctgcag
acaaacttacggaaagtgataaagggtgtgggaggtctgagccacgagcagtggaggtcg
ttttacaacgagaagaaaacagtagatgctaaaaactttcttgatggagatttgattgaa
tcattcctagatcttagcaggaatcggatggaagagatttcaaaggctatgtcagttcca
gttgaggaactaatgaagagagtggaagagttgacaaggttgcattag
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