Solanum pennellii: 107011511
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Entry
107011511 CDS
T04130
Name
(RefSeq) cleavage stimulating factor 64 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107011511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107011511
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107011511
U7-dependent histone pre-mRNA processing factors
107011511
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Motif
Pfam:
RRM_1
CSTF_C
CSTF2_hinge
RRM_7
RRM_10
partial_CstF
Motif
Other DBs
NCBI-GeneID:
107011511
NCBI-ProteinID:
XP_015066523
UniProt:
A0ABM1G651
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Position
2:42323474..42331079
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AA seq
519 aa
AA seq
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MATSDSQRRRVFVGNIPYDATEEQLMQICEEVGPVVSFRLVIDKETGKPKGYGFCEYKDE
ETALSARRNLKGYEINGRQLRVDFAENDKNSDRNREQGRGGPGMTANVGDPQKHIGGPVI
SVDSALQQPLGMSVAMTAAAVMAGTLGAAQSGCSFNQSGIDPLTLHMSKLSRSQLNDVMS
EFKAMCTQNKEQTRQLLLAIPNLSKALFLLLVCICLPMQAQLILGMVTQPMLQTPNIRQS
AAPKLQPLVLDSQQSQQLATQSLLGLPPLPPSLLPQAQPQTQLALSQNQVLQSQPNPSRN
PSVNASQVNVSINPPVQVGTSVAVKQQMQPFFLQQAGPVASMNFTYNSQLGTEKTRYPPP
PSSMHTPSLEQGSQGNPSVVSGVLDNTNKDSRRPQAPNNSSLIAIPAYPSGLPEVKRGAA
YNLDPLSRPSKTTRLNDGISYALPDASVSTPQSGCSTQVLAAAEMSNPDKQATQVQLPSD
VESALLQQVLGLTPEQLSALPPDQQQQVIQLQQMLRQRT
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggccacttctgattctcagcgtcgccgcgtttttgttgggaatataccctatgatgct
actgaggagcaactaatgcaaatctgtgaggaagttggaccagttgtttccttcagatta
gtgattgataaagaaactggaaaaccaaaaggttatggattctgcgaatacaaggatgaa
gagactgcattaagtgctcgccgcaaccttaaggggtacgagataaatggtcggcagcta
agagttgattttgctgaaaatgataaaaattctgacagaaatcgtgaacagggtcgcggc
ggacctggtatgactgcgaatgttggtgatcctcaaaaacacattgggggaccagttatc
tctgtggattctgcacttcagcagccattaggcatgtcagtagctatgactgctgcagcc
gttatggcaggaactcttggagctgctcagagtggctgctcattcaatcagtctgggata
gatcctttaacactacatatgtccaaattgtctaggagccaactgaatgatgttatgtct
gagttcaaggcaatgtgtacacaaaacaaggaacaaacacgccaactgctgctagcaatt
ccaaatttgtcaaaagctctttttctgttacttgtttgtatttgtttgccaatgcaggca
caactaatactgggaatggtaacccaaccaatgttgcagacgccaaacattcggcaatct
gctgcacctaagctgcagccattggttctagatagtcagcaaagtcaacaactggcaact
cagtctcttcttgggttacccccacttccccctagtttgctcccccaggcacagcctcag
actcaactagcactttcgcaaaaccaagttttgcaaagtcagcctaacccttctagaaat
ccttccgtcaatgcaagccaagtcaatgtgtcaattaatccgccagttcaggtgggaact
tctgttgctgtaaagcagcaaatgcagccttttttcttacaacaagctgggccagttgct
tccatgaattttacatataatagtcagctggggacagaaaagacaagatatcctcctcct
ccttcatcaatgcataccccgtcattggaacaaggttctcagggaaatccttcagtagtt
tctggtgtcttggataatacgaataaagactctcgacgaccccaggctcccaataattca
tctttgattgccataccagcttacccttcaggtttgcctgaggtgaagagaggggcagca
tataatctagatcctctgagtcgtccatcgaaaacgacaaggctaaatgatggaataagt
tatgccttacctgatgcaagtgtatctacgccccagtcaggatgttcgactcaagtttta
gctgcagcagaaatgtcaaaccctgataaacaagctactcaggtacagcttccctcggac
gttgaatctgccttgctgcaacaagttctgggtctcactcctgaacagttaagtgcactg
ccaccagatcaacagcagcaggtcattcagctccaacagatgctccggcagcgaacatag
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