Solanum pennellii: 107011612
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Entry
107011612 CDS
T04130
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107011612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107011612
03019 Messenger RNA biogenesis [BR:
spen03019
]
107011612
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107011612
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107011612
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
107011612
NCBI-ProteinID:
XP_015066679
UniProt:
A0ABM1G6J7
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All DBs
Position
2:complement(17372027..17392616)
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AA seq
689 aa
AA seq
DB search
MDEGEGGLNFDFEGGLDTGPTHPTASVPVIQSFDHTAAAASSANINPPTVPAVGGQGDVG
FVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHT
IEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEILQKIQHLASNNYCYSNRFNQNR
NANYSTQTDKSQASQAQNGTSLAVKSTATETPIIQQHQPHQQVQPPQLQGGPTQAQIHPN
GQQNQADRTAVVLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENV
ILIFSVNRTRHFQGCGKMTSRIGGAANGGNWKHEHGTAHYGRNFSLKWLKLCELSFQKTH
HLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKRLEEKAKGV
NPDNGKDNPDIVPFEDNEEEEDEEEESEDEDENFDQGFGPAALGRGRGRGIAWPPIMPFG
HGNRPPPGMRGFPPGMMGDGFSYGAMTPEGFPMPDHFGMGPRPFPPYGPRFSSDLMFHGR
PPAGGFGMMIGPGRPPFMGGMGPGATGPPRAGRAVGMNPSFIPPSSQPSQYPYRAKREQR
APVSDRNDRFSSDQGKGQETMGSVNGPDGVHMQIGKSEHDNQFGAGNSLKNDGSESEDEA
PRRSRHGDGKKMRREVHEDAATGSENRCQ
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagaagggggtttgaattttgattttgaaggtggcttagacactgggcca
acacacccaactgcatcagttccagtaatacaatctttcgatcacactgcagcagctgct
tcaagtgctaatattaacccgcctactgtcccagcggttggtggccaaggcgatgtagga
tttgttggaaatcgtcggagtttcaggcagactgtttgccgccactggctgcggtcactg
tgtatgaagggtgatgcctgcggcttccttcaccagtatgacaaatcacgaatgcccatt
tgtcgcttctttcgactctatggtgagtgccgtgaacaggactgtgtttataagcacacg
attgaggatatcaaggaatgcaacatgtacaaattggggttttgtccaaatggtcctgat
tgtcgctatagacatgcaaagatgcctgggcctccacctccagtggaagaaatccttcag
aaaattcagcacctggcatccaacaactattgttactcaaacaggtttaatcaaaatcga
aatgctaattattcaacccagacagacaaatctcaggcttcacaagcacagaatggaacg
agtcttgctgtgaaatctacagcaactgagacacccattatacaacagcaccagccgcat
caacaagttcagccacctcaactacaggggggcccaactcaagcacaaattcatcccaat
ggccagcaaaatcaagctgatagaactgcagtagtcctgccgcaaggaacttctaggtac
tttatagttaaaagctgcaaccgtgagaatcttgaattgtcagtacaacaaggagtttgg
gcaactcaaagaagcaatgaggctaaactaaatgaagcttttgactctgtggaaaatgtc
attctgattttttcagtcaaccggactagacattttcagggttgtggaaagatgacatct
agaattggtggcgctgctaatggaggaaactggaagcatgaacatgggactgcccattat
ggacgtaatttttcattgaaatggttaaagctatgtgaactgtccttccagaaaactcac
catttgaggaatccatacaatgagaacttaccggtgaagataagcagagattgtcaagaa
ttagagccctctgttggtgagcagttggcttctttgctttatcttgaaccagatagcgaa
cttatggcaatttcacttgcagcagaatccaagcgactagaagaaaaggcgaagggagtg
aaccctgacaatgggaaagataacccggatattgtaccatttgaagacaacgaagaagag
gaagatgaagaggaagaaagtgaggacgaggatgaaaactttgatcaaggttttggacca
gctgcgcttggtagaggaaggggcaggggaattgcatggcctccaattatgccttttgga
catgggaacaggcctcctcctgggatgcgaggcttccctccaggcatgatgggtgatggg
ttttcttatggagctatgacacccgagggtttcccaatgcccgatcattttggaatgggt
ccccgaccttttcctccttatggcccacgattttcaagtgatttgatgtttcatggccgc
cctccagctggtggatttgggatgatgataggtcccggaaggccccctttcatgggcgga
atgggtccgggagcgacaggcccacccagagctggtcgagcagttggaatgaatccatca
ttcattccaccctcatctcagccttctcaatatccttatagggctaaaagagaacagcgg
gctccagttagtgacaggaatgatagatttagctcagatcaaggtaagggtcaggaaacg
atgggttcagttaatggaccagatggagtacatatgcaaatagggaaatctgaacacgat
aaccagtttggtgctggaaacagcctaaaaaatgacggaagcgaaagcgaggatgaagca
ccaagaagatcaagacatggggatggaaagaagatgaggcgggaagttcatgaagatgct
gcaactggctcagaaaataggtgtcagtaa
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