Solanum pennellii: 107011622
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Entry
107011622 CDS
T04130
Name
(RefSeq) vacuolar sorting protein 39-like isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
spen
Solanum pennellii
Pathway
spen04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107011622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107011622
Membrane trafficking [BR:
spen04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
107011622
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_19
TPR_WDR35
zf-HC5HC2H
zf-HC5HC2H_2
AlaDh_PNT_N
Motif
Other DBs
NCBI-GeneID:
107011622
NCBI-ProteinID:
XP_015066691
UniProt:
A0ABM1G6K8
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Position
2:complement(52142715..52153991)
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AA seq
1001 aa
AA seq
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MVHTAYDTFQLLNNSPSKIDAIESYRSNLLIACSDGSLRVYVPESSVSDQSDFHSQTLGL
HQGPYVLERTLNGFSRRQMLAMEVLVSRELLLSLSESIALHRLPDLETLSVITKAKGANV
YSWDDKRGLLCFGRQKRVCIYKHDGGSGFVEVKEFGVPDTVKSMSWCGENICLGIRREYK
ILNTSNGVLSEVFSSGRIAAPLVVALPPGELLLGKDNIGILVNQNGKLIQEGRICWSEAP
AAVIIQKPYAIGLLGRHVEIRSLRVPYPLIQTVVLRNVRHLLRSNNTVIVALDNSVFGFF
PVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRSSKEQSIHMRYAHFLFENGSYEEAM
EHFLASQVEITYVLALYPSIIVPKSSCIPEPQKFADVADAPYLSRGSSGLSDDLDSPSSD
VFESDEMDIESEKMSHNTLMALIKYLQKKRYSVIEKATTEGTEEVVSDAVGDNFISYGTD
RSKKPTKGRIHIPITSIARDMAAILDTALLQALFLTGQSSAATNFLKVLNYCDVKICDAF
LQERSQFACQIELYRCNSMHHEALKLLHQLVEESKSEQTPVELLTKFKPDMIIEYLKPLC
ATDPMLVLEFSLPVLESCPMQTIELFLSGNIPADLVNSYLKQHAPDMQATYLELMLAMNE
NSISGNLQNEMVQIYLSEVLDFHAEHNSQQKWDEKTCPPPRKKLLSALEGMSGYTPEVLL
KRLPPDALYEERAILLGKLNKHELALSIYVHKLHVPELALSYCDRVYDSGLQQHSAKSYG
NIYLTLLQIYLNPRKTTKKFEKKITNLVSAQSPRIPKVGLGTTGKVKGGRSKKIAEIGGA
EDTRFSLSGTDSGKSDGDTEDAAEEGGSTIMLDQVLDLLSRRWDRIHGAQALKLLPRDTK
LQNLLPFLGPLLRKSSEAYRNFSVIKSLRECENLQVKDELYNQRKAVLKITSDSMCSLCN
KRIGTSVFAVYPNGKTIVHFVCFRDSQNMKAVGRGSQLRKR
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacactgcctacgataccttccaactcctcaataattctccctccaaaatcgat
gccattgaatcataccgctcaaatttgctcatcgcatgttccgatggatcgctccgtgtt
tacgttccagaatcctcagtttccgatcaatctgatttccattcccaaaccttagggctt
catcaaggaccatatgtgcttgaaagaactctgaatggattctccagaagacaaatgctg
gccatggaagtcctcgtctcacgagaacttctgctttccctctccgagtcaattgcgtta
catcggttgcctgatttggagactttatcagtgattactaaggctaaaggtgcaaatgta
tattcgtgggatgataaacgagggttactttgcttcggcaggcaaaaacgagtctgtatt
tacaaacacgacggggggagtggatttgtggaggtgaaagaatttggagttcctgacaca
gttaagtcgatgtcatggtgtggtgagaatatttgcttggggattagaagagagtacaag
atattgaatacctctaatggtgtattgtctgaggtattctcttcagggaggatcgccgca
cctcttgtggtggctcttccacccggagaactacttttgggcaaggataatattggtatc
ttagttaaccaaaacgggaagttgatccaagaagggaggatttgttggtctgaggctcct
gcagctgttattatccagaagccgtatgcaataggtcttttggggcgacatgttgagata
cgttctcttcgtgttccttatcctttgattcaaacagttgtccttcggaatgttcgtcat
cttcttcgaagcaacaatactgtgattgttgctcttgataattctgtttttggatttttt
cctgtacctcttggtgcgcagattgtacaactcacagcatctggaaactttgaggaggcc
ttggctttgtgcaaattgctaccaccagaagattcaagtcttagatcttcaaaggagcag
tcaattcatatgagatatgcgcactttctatttgaaaatgggagctatgaagaagcaatg
gaacattttctggcatctcaagttgaaatcacttatgtgctcgccttatatccatccatt
attgttccaaaatcatcttgcatacctgaaccacagaaatttgcagatgttgcagatgca
ccatatctctcccgaggctcttctggtctgtcagatgatctagattctccgtcttcggat
gtatttgaatctgatgaaatggatatagagtccgagaaaatgagccacaacactttgatg
gctctgattaagtatttgcagaaaaagagatacagtgtcattgagaaagccacaactgag
ggaactgaagaagtggtttcagatgctgttggagataatttcatttcttatggaactgac
cggtccaaaaaaccaaccaagggcagaattcatattcctatcacttccatcgctagggac
atggctgcaatactggacactgcacttcttcaagctctgtttttaactggacagtcctct
gctgctacaaattttctgaaagtcctcaactactgtgatgtgaaaatatgcgatgcgttc
ctgcaagagagaagccagtttgcttgtcagatagaactttatagatgcaattcaatgcat
catgaagcactgaaacttcttcatcaactggtagaagagtccaagtcagagcaaactcct
gtagagctcttaacgaagttcaagcctgatatgatcattgaatatctcaaacccctttgt
gcaactgaccccatgcttgtcctggagttctcattgcctgttcttgaaagctgtccgatg
caaaccattgagctatttttgtctggtaacattccagcagacttggtgaattcttactta
aagcagcatgccccagacatgcaggcaacatatctagaactcatgcttgccatgaatgaa
aatagtatctcagggaatctgcagaatgaaatggtgcaaatttatctctcagaagtgctt
gattttcatgctgaacataattcccagcaaaagtgggatgagaaaacatgtcctccacca
aggaaaaagctactgtctgctttggagggtatgtctggatatactccagaggtgttgctg
aagagacttccaccagatgctctgtatgaagaacgtgcaattcttttggggaaattgaat
aaacatgaacttgccctgtctatttatgtgcacaagcttcatgttcccgaacttgcactg
tcctattgtgaccgggtgtacgattcaggacttcaacaacattcagcaaaatcttacgga
aacatttacctgactctactgcaaatctacctaaatcctaggaagacaacaaaaaaattt
gagaagaaaattactaatctggtatcagctcagagccctaggattccaaaagttggttta
ggaactacaggaaaggtaaaaggaggccgctccaagaaaattgctgaaattgggggcgct
gaggacactcgattcagtctaagcggcacagacagtggtaagagtgatggagatacagaa
gatgcagccgaggaaggtggttctactattatgctagatcaggtacttgatcttttgagc
agaaggtgggatcgaatccatggtgcccaagcgctgaaactgcttccaagggatactaag
ctacagaacttgcttccatttcttggacctcttctgaggaaatccagtgaagcatatcgg
aacttctcagtgataaaaagcttgagagagtgtgaaaacctacaggttaaagatgaactg
tataaccaaaggaaagcagttttgaagatcacaagcgatagcatgtgctctctttgcaat
aagaggatcggcaccagtgtctttgcagtctatcctaatggtaagacaatcgtgcacttt
gtctgctttagagattcacagaatatgaaggcagttggaagaggctctcagttgaggaaa
agatga
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