Solanum pennellii: 107011665
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Entry
107011665 CDS
T04130
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107011665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107011665
Spliceosome [BR:
spen03041
]
Complex C
Other components
Step II factors
107011665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
107011665
NCBI-ProteinID:
XP_015066733
LinkDB
All DBs
Position
2:complement(47192361..47196913)
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AA seq
571 aa
AA seq
DB search
MDLLQSSYEDESPDSSPIRMLPSKSAAPKVDDTMLALTVAGEAARAQSKPLDPTQHIVGF
NPTYEQLWAPICGPAHPYAKDGLAQGLRNHKLGFVEDASIEPFVFDEQYNTFQKYGYAVD
PSENSYIGDLEKMKECDAISVYNIPQHEQKKRKLEKKKEKMEEEEGDEQDVDMTEVENPS
TDTWLMKNRKSPWAGKKEGLQVELSEEQKKYAEEYAKKKGEERGGDKDKAEPMVEKSTFH
GKEEKDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAG
MDTKVKIWDVYNSGKCMRTYMGHTKAVRDIWFSNDGSKFLTAGYDKYIKYWDTETGQVIQ
TFTTGKIPYVVRLNPDEDKQNVLLAGMSDKKIVQWDINSGQITQEYDQHLGAVNTITFVD
NNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISPHPNGNWIAAQSLDNQILIY
STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVFSGDGEGRCWFWDWKSCKVFRTLKC
HDGVCIGAEWHPLEQSKVATCGWDGLIKYWD
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggatcttttacaatcttcatacgaggatgaatcgccggattcttccccaatacgcatg
cttccttctaaatctgccgcccctaaagtcgacgacaccatgctagccctaacagtcgcc
ggcgaagctgccagagctcaatccaaaccccttgacccgacccagcacattgttggattc
aacccgacgtacgaacaactatgggcaccaatttgcggtccagctcacccgtacgcaaag
gacgggttagctcaaggactcagaaatcacaagttagggttcgttgaggacgcgtctatt
gagccctttgtattcgatgagcagtacaatacttttcagaagtatgggtacgctgttgat
ccatctgaaaatagctacatcggtgatttggaaaaaatgaaggagtgtgatgcaatttct
gtgtataacataccacagcatgaacagaagaagaggaagttagagaaaaagaaggaaaaa
atggaggaggaggagggtgatgagcaggatgtggatatgacggaagttgaaaatccgtcc
accgacacatggttgatgaagaacaggaagagtccatgggctggaaagaaagaagggttg
caagtagaattatctgaggagcagaaaaagtatgctgaagagtatgctaagaagaagggt
gaagaaagaggtggtgataaagataaggcggagcctatggttgaaaagagcacatttcat
ggtaaagaggaaaaggattatcagggcaggtcttggatcgctccaccgaaggatgcaaag
gctgctaatgatcattgctatataccaaagagattggtacatacttggagtggacacacg
aaaggggtttcagctattaggtttttccctaagcatggtcatttgattttgtcagctggg
atggatacaaaggtgaagatttgggatgtttacaattccggtaaatgtatgaggacttac
atggggcatacaaaggcagtgagggatatttggtttagcaatgacgggtcgaagtttttg
acagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaa
acgttcacgacgggtaagataccctatgtggtgaggcttaatcctgatgaagataagcag
aatgtacttttggctggtatgagtgataagaagattgtgcagtgggatataaacagtgga
cagattacacaagaatacgatcaacatctgggggcagttaatacaattacctttgtggat
aataacagaaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggt
attccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttcg
ccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttac
agtacgcgagagagatttcagttgaacaaaaagaaaagatttgctggacacattgtcgct
ggttatgcctgccaggtcaatttctcacctgatgggcggtttgtcttctcaggagatggt
gaaggcagatgctggttttgggattggaaatcgtgtaaggtcttcagaactctcaagtgt
catgatggggtctgtattggtgcagagtggcatcctctggaacaaagtaaagttgctact
tgtggatgggatggtttgatcaaatactgggactag
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