Solanum pennellii: 107012350
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Entry
107012350 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spen03009
]
107012350
03036 Chromosome and associated proteins [BR:
spen03036
]
107012350
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107012350
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Helicases
107012350
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
107012350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
FlpD
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
107012350
NCBI-ProteinID:
XP_015067656
LinkDB
All DBs
Position
3:complement(1626380..1631655)
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AA seq
681 aa
AA seq
DB search
MPALVESETMASEDLKELKKSGNGSSADSHKRSKKTKIDYGSDSEELKKSKKKDKKRKAL
SLDDQENGNSEVLESINLSEDEKKKKKKKKKKEEDEAKLVEEDSEEKEEDPNALSNFRIS
VPLREALIAKGINALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGPTK
VSRKTGYGRAPSVLVLLPTRELALQVFADFEVYGGAVGLTSCCLYGNSPMGQQQVQLKRG
VDIVVGTPGRIKDHIERGNIDFRSLKFRVLDEVDEMLKIGFVDDVEFILGKVEDASQVQT
LLFSATLPSWVKHISSKFLKPDKKTADLVGDEKMKASKNVRHIIIPCSSSARSQLIPDII
RCYSSGGRTIIFTETRGYASELAGILPGARALHGDIQQSQREITLSGFRSGKFLTLVATN
VAARGLDIDNVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKKSNISKIERES
GVKFEHLSAPQPADVAKAAGKEAAEAIAEISDSVIPAFKAAAEELLHTSELSPAELLAKA
LAKAAGYSEIKSRSLLSSMENCVTLLLECGRPIFSPSFAYNVLRGFLTEDKVESIKGLTL
TADGKGAVFDVSADDLDTFLAGKNAQGVSLEVVKELPRLQEKDQQRGGRFGGGRGDRRNG
GRFSGGRGGGGRGYGNFGRRW
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcacttgttgaaagtgaaacaatggcgtctgaagatttgaaggagctgaagaag
agcggaaatgggtcatccgccgactcccataagaggtcgaagaagaccaagattgattat
gggtctgattcagaggagctaaagaagagtaagaagaaagataagaagcgtaaagcttta
agcttggatgatcaggagaatggaaattcggaggttttggaatcgattaatctgagtgag
gatgaaaagaagaagaagaaaaagaagaagaaaaaggaggaggatgaggctaaattggtg
gaggaggatagtgaggagaaagaggaggatcctaatgccttgtctaattttaggatttca
gtgccactgagagaagctttgattgccaaagggataaatgcgctgtttcctattcaagct
atgacttttgataccatattggatgggtctgacttggttggtcgagctcgcactggtcag
ggtaaaacattagcctttgtgttgcccatattggagtccctgataaatggacctactaaa
gtatcacggaaaacagggtatgggagggctccaagtgtcctagtgcttttacctactagg
gagttggcacttcaggtgtttgctgactttgaagtgtatggtggggctgtggggctaact
tcatgttgtttatatggaaattcacccatgggacaacaacaagttcaactgaaaagagga
gttgatatcgtcgtaggtactcctggaagaattaaggaccacatcgaaagaggaaatatt
gatttcaggtccctaaagttccgtgttcttgatgaagttgatgaaatgttgaaaattggt
tttgttgatgatgttgaatttatattaggcaaggtagaagatgcaagccaagttcaaaca
cttcttttcagtgcaactttgccgagctgggtgaagcatatatcttcgaagtttctcaaa
cctgataagaaaacagctgatcttgttggtgatgagaaaatgaaggcaagcaagaatgtg
aggcatattattataccatgctctagttcagccagatctcagctgattcctgatataatt
cgctgctacagcagtggtggacgcacaattattttcactgagacaaggggttatgcttcg
gagctagctggcatattgcctggggcacgtgctttgcatggagacatacaacaatcccag
cgtgagattacactttctggattcagatcaggaaagttccttacattagtggccacaaat
gtagcagcccgtggattggatatcgacaacgttcagttaattattcagtgtgagcctcca
cgtgatgttgaagcgtatattcatcgatcaggcaggacaggacgagcaggaaatactggt
gttgctgtaatgctttacgatcctaagaagtccaacatctctaagattgaaagagaatct
ggtgtcaagttcgagcatctgtctgctccacagccagctgatgttgccaaagctgctggg
aaagaagcagcagaagcaattgctgaaatttctgatagtgtaatacctgctttcaaggct
gctgcagaggaacttctacatacctctgaactatcaccagctgaattgcttgcgaaggca
cttgccaaggcagctggctactctgagatcaagagtcgttcgcttctttcttccatggag
aactgtgttactctacttcttgagtgcgggaggcccatattttcaccttcctttgcctat
aatgttttgcgggggttcctaactgaggacaaggttgaatcaatcaaaggtcttactttg
acagcagatggaaagggcgcagtttttgatgtatctgctgatgacctggacacatttcta
gctgggaagaacgcacaaggtgtaagcttagaagtagtaaaagaactgccccggttgcaa
gagaaagatcagcagagaggtggaagatttggtggtggtcgcggtgacaggagaaatgga
ggtcgattttctggaggcagaggtggtggtgggagaggttatggaaactttggccgtaga
tggtga
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