Solanum pennellii: 107012410
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Entry
107012410 CDS
T04130
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107012410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107012410
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107012410
mRNA degradation factors
5'-3' decay
Lsm complex
107012410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
107012410
NCBI-ProteinID:
XP_015067736
UniProt:
A0ABM1G983
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Position
3:complement(74728899..74733697)
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AA seq
128 aa
AA seq
DB search
MSWASPEDIYTSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLESACERAIVGDL
YCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVSEAEIRRAQKAERDSTDLKGSMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaagtccagaagatatctatacctccacttctcttgcaagttatcttgac
aagaaacttcttgtgctgttgcgagatgggcgaaagcttttaggaatacttcgttctttt
gaccaatttgctaatgctgttcttgaaagtgcatgtgagcgtgctattgttggtgatcta
tattgtgatatcccattaggtctctatattatacgtggggaaaatgttgtgttaattggt
gaactggacgtggataaggaggagcttcctccccatatgacacgtgtttcagaagctgag
ataagaagggcacagaaagcagaaagggactctacagatcttaaaggctcaatgaggaag
aggatggagtttcttgatatggattaa
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