Solanum pennellii: 107012471
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Entry
107012471 CDS
T04130
Name
(RefSeq) uncharacterized protein LOC107012471
KO
K14315
nucleoporin NDC1
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107012471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107012471
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107012471
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
107012471
NCBI-ProteinID:
XP_015067812
UniProt:
A0ABM1G9E9
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All DBs
Position
3:64948377..64952353
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AA seq
558 aa
AA seq
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MLISIVERSLFRDNDGGTKVVKHRFLGFLIWQALQSTAVFFLSKTLLLSLFTRTPFKPSF
LSIFTFIVFHFSLLIFSTSLFIISSPRPQRAASPLNLLLGTARLILVPISNSQPLLSPDF
RLRARASISFVLFVAVAAVSASLSVITLCLSCNAFDQLKHRRLVIGKLGFWGLQIGLIYG
VHYVYNKRWVLQFPIIQRPPFFSFKMGLPLAVGKALKLSAAGYVLSAILSFVLPYEFKGQ
LPVGNFITEQILFYIGSFVVILCWELCHHLHQVLHTKRSVFAPPKGSAAAETNPSEPLLA
ALEESTPKSLLQYLAYLDLCMVSEGNVDPWRRAAFFEESGETYKRVISVCLTPVEQFTRN
VSEVLESSPVGNSLQLSHQLRSPNEQLADSKVYESFDDFQLLAWCARIVASLTVHSHKED
RFGVAQLSGSNAAVISTLLSSLLAVETLMGKKTNLQSSNTLMDPAGIKWATLNPGRRDSA
AGMAGRRKGAPFYAKAYSMADILKTSIYGIVWAFYDEMSHSAKAGLLEKDWIISSKPLYG
TRELLSQKLRLFLDFQAS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcttatatccatagtagaaagatccttattcagagataacgacggcggtactaaagtc
gtcaaacaccgcttcctagggttcttaatctggcaagcgcttcaatccaccgccgtcttc
ttcctctccaaaaccctactcctttctctcttcactcgaacccccttcaaaccctcattt
cttagtatcttcactttcatagttttccacttctcccttctcatcttctctacttccctt
ttcatcatctcttctcctcgccctcaacgcgctgcttcccctctaaatcttctgctcggt
actgctcggctgatacttgttcccatttctaactctcagccgctgctgtcccctgatttt
cggctccgggcgagggcttccattagttttgtgctgtttgtggcggtggctgctgtttca
gcgtctttgtctgtgattaccctctgtttgagctgtaatgctttcgatcaattgaaacac
agacggctggttattgggaaattagggttttggggtttgcagatcggattgatatatgga
gtgcattatgtatataacaagcggtgggttttgcagttcccgatcatccagcgtcctcct
tttttcagttttaagatggggctacctttagctgttgggaaagctttaaagctttctgct
gctggttatgtgctttcagctatcctttcatttgttctaccttatgagtttaagggtcaa
cttccagtaggaaacttcatcactgagcagattctcttctatattggaagttttgtggtg
attctctgctgggaattatgtcatcatttacaccaggtgttacacacaaaacggtccgtc
tttgcccctccaaaaggttctgcagctgctgaaacaaatccaagtgaaccgcttctggcc
gcattggaggagagcacaccaaaatctcttttgcagtatcttgcataccttgacctttgt
atggtatccgaaggtaatgttgatccttggcgccgagctgccttctttgaggaaagtggt
gaaacttacaaaagagtcatttctgtgtgcttgacccctgttgaacaattcacaagaaat
gtgagtgaggttttggaaagctctccagttggtaactccttgcaactttctcaccagttg
cgttctccaaatgaacagcttgccgattcaaaggtttatgaatcatttgatgactttcag
ctactagcttggtgtgctcgcattgtggcttcactgactgtgcattcacacaaggaggac
agatttggtgttgctcaactatcagggagcaatgctgctgttatttcaacattgctatcg
agtttattagctgttgaaactttgatgggcaagaaaaccaacttacaatcgtcaaatact
ttaatggatcctgctggtattaagtgggctacattaaacccaggaaggagagattcagca
gcaggcatggcaggaagaagaaaaggagcccctttttatgcaaaagcatattcaatggct
gatatcctgaagacttccatctatggtattgtctgggctttctacgatgagatgtcacat
agtgccaaggcgggactgcttgagaaagattggatcatcagtagtaagccactgtatgga
actcgtgagctcctttcacagaaactgcgactgttcctggacttccaagctagctag
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