Solanum pennellii: 107012604
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Entry
107012604 CDS
T04130
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase 2
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107012604
Enzymes [BR:
spen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
107012604
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
107012604
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-GeneID:
107012604
NCBI-ProteinID:
XP_015067967
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Position
3:complement(5177091..5192853)
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AA seq
588 aa
AA seq
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MKIVTYNVNGLRPRIQQYGSLLKLLDSLDADIICLQETKLSKNDIRADLVRAEGYESFFS
CCTRTSDRGRSSGYSGVATFCRVKSAFMSNEVALPISAEEGFTGLLATSKGYEPRKEECA
SIAEGLECFTRDELLKVDSEGRCLITDHGHFVLFNLYGPRAVQDDSERIQFKLTFFKMLE
RRWECLMHQGRRIVIVGDLNIAPAAIDRCDAEPDFEKNVFRQWFRSLLVQNGGRLLDIFR
AKHPDRKGAYTCWSQSTGAEEFNYGSRIDHILSATSCLHGEEIQEGHDFVTCNVAECDIL
MKFQRWKPGNTPRWKGGRSIKLEGSDHVPVYMSLVEIPEVLQHSTPPLSTRYHPQVFGSQ
TLVSMFTRRQTTEQVTSEESESPHIPSQEDFLSTPETYDSRAAQISVLGSQSNSNILPCI
ATKKKARLGQGSQLTLNSFFQKHTHRSETSSSSFADSKLCQTDISYSRIEPDGVPSPADE
SGASKDCRSSAIDSNQHKCQLDACDSDKEKRKVALQEWQRIQQLMQNSVPLCKGHQEPCV
PRVVKKAGPNLGRRFYACARAEGPSSNPEANCGYFKWAAVLKSKGRGK
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagtgacgtacaacgtgaacggtttaaggccacgcatacagcaatacggttca
cttctcaaattgttggattcgcttgatgctgatattatctgtttacaggagactaaattg
tcgaagaatgatattcgagccgatttggttcgtgctgagggttatgagtctttcttctct
tgttgcactcgtacttctgatcgtggacgctcttctggatattccggtgttgctaccttt
tgtcgtgtaaaatctgcattcatgagcaatgaagtagctctgccgatttctgcagaagaa
ggcttcactggtctcctcgcaacatctaaaggatatgaacctagaaaggaggagtgcgct
tcaatagcagaaggcctcgagtgttttactagagatgagcttcttaaagttgatagtgag
ggacgttgtctgatcactgatcatggtcattttgttctattcaatttatatgggcccaga
gctgttcaagatgactctgaaagaatccaatttaagctcacattttttaagatgttagag
agaagatgggaatgcctgatgcatcaaggaaggaggattgttattgtaggtgacctcaat
attgctcctgctgccatagatcggtgcgacgcagaacctgattttgagaagaacgtgttc
agacaatggtttagatcattgctagtgcaaaacggagggcgtctccttgatatttttaga
gcaaagcatcctgataggaaaggagcctatacttgctggtcacagagtacaggagccgag
gaatttaattatggttctaggattgatcacatacttagtgccacatcatgcttgcatggt
gaggaaattcaggaaggacatgactttgttacttgcaatgttgcagagtgtgacatattg
atgaaatttcaaaggtggaaacctggaaatacgccaaggtggaaaggagggaggagcatc
aaattagaaggttctgatcatgttccagtttacatgagtttagtagaaattcctgaagta
ttgcagcatagcaccccgccattatctaccagatatcatccccaggtctttgggagtcaa
actcttgtgtcaatgttcacgagaaggcaaacaactgagcaagttacttcagaggaaagt
gaaagccctcacattccaagtcaggaagactttctttcaactccagagacttatgatagt
agagctgcgcagatttcggtgcttggctctcaaagcaactctaatattcttccctgcatt
gcgaccaagaagaaagcgaggcttggtcaggggtctcagctcacacttaactcattcttc
cagaaacacacacatagaagtgagacttctagcagcagctttgctgattctaaactttgt
cagacagacatctcttactctcggattgagcctgatggagtgccttctcctgctgatgaa
agtggcgcttcaaaggactgcagatcaagtgcaattgacagtaatcaacataagtgccag
ctagatgcatgcgactcagataaagagaagaggaaagtggcattacaggagtggcaaagg
attcagcaattgatgcagaatagtgtacctctttgtaagggccatcaagaaccttgtgtt
cctcgggtcgttaaaaaagcagggcccaatttgggccgcagattttatgcttgtgctcga
gctgagggaccttcatcaaatcctgaagcaaactgtggttacttcaaatgggctgctgtt
ctaaaatccaagggaagaggaaaatga
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