Solanum pennellii: 107012611
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Entry
107012611 CDS
T04130
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spen
Solanum pennellii
Pathway
spen04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107012611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107012611
03009 Ribosome biogenesis [BR:
spen03009
]
107012611
04131 Membrane trafficking [BR:
spen04131
]
107012611
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spen04147
]
107012611
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
107012611
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
107012611
Membrane trafficking [BR:
spen04131
]
SNARE
SNARE associated proteins
Others
107012611
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107012611
Exosome [BR:
spen04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107012611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_18
AAA_17
AAA_28
Mg_chelatase
nSTAND3
ATPase_2
IstB_IS21
AAA_lid_PRS2_C
Parvo_NS1
ABC_tran
Viral_helicase1
AAA_7
NACHT
Vps4_C
TsaE
NB-ARC
DUF815
RCF1-5-like_lid
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
107012611
NCBI-ProteinID:
XP_015067975
LinkDB
All DBs
Position
3:complement(67281895..67285929)
Genome browser
AA seq
810 aa
AA seq
DB search
MADPKSSTSDSKNNKKDFATAILERKRSPNRLIVDEAINDDNSVVSMHPAKMEELQLFRG
DTVLLKGKKRKDTVCVVLADEQCEEHKVRLNKVVRANLRIRLGDVVSVHQCPDVKYAKRV
HILPIDDTIEGMTGNLFDAYLKPYFLESYRPVRKGDLFVVRGGMRSVEFKVVETEPGEYC
VVAPDTEIFCEGEPIRREEEERLNEVGYDDVGGMRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIGRAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFEEAEK
NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDP
ALRRFGRFDREIDIGVPDEIGRLEILRIHTKNMKLDDNVDLERVARDTHGYVGADLAALC
TEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGASNPSALRETVVEVPNTS
WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGG
AADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQ
IFKACLRKSPVAKDVDLSALARYTHGFSGADITEICQRACKYAIRENIEKDIERERKRSL
NPEAMDEDDTDEVAEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGLGTEFKFA
EHAANATPTGATADPFASVNAAGDEDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccgaaatcttccacttccgactcgaaaaacaataaaaaagattttgctacg
gcaattttggagaggaagagatctcctaaccgccttattgttgatgaagctataaatgat
gataattcagtggtatctatgcaccctgctaaaatggaagagctccagttgtttagagga
gatacagtattgctaaagggtaaaaaacggaaggacactgtttgtgttgtccttgcggat
gagcaatgtgaagaacataaggtcagattgaacaaagtcgttcgggcgaaccttcggatt
cgtcttggggatgttgtatctgtgcaccagtgtcctgatgttaagtatgcgaagcgtgtt
catattcttcctattgatgatacaattgaaggcatgactggcaacctgtttgatgcctac
ttgaagccatacttcttggagtcttaccgccctgtgaggaagggcgatctctttgtagtc
agaggtggcatgcgcagtgttgaatttaaagtggttgagacggagcctggagaatattgt
gttgttgcacctgatacagagatcttttgtgagggagaaccaatcaggcgtgaagaggag
gagagactaaatgaagttggatatgatgatgttgggggtatgaggaagcaaatggctcag
attcgtgagctggttgaactccctctgaggcatccgcagttgttcaagtcgattggtgtg
aaaccaccaaaaggtattcttctctatggtcctcccggatcggggaaaaccctcattgga
agagctgtggcaaatgagactggtgcctttttctttttgattaatgggcctgaaattatg
tccaaattggctggtgagagtgagggtaacttgaggaaggcatttgaggaagccgaaaag
aatgcgccatctattatatttattgatgagttagactcgattgctccaaagagagaaaag
acacatggtgaagttgagcggcgaatagtttcccaacttctgacattaatggatggactc
aagtctcgatcacatgtgattgtcatgggggctaccaatagaccaaacagtattgatcct
gctctcaggagattcggaagatttgatcgggagattgacattggcgtaccagatgaaata
gggcggctggagatcctacgtattcatactaaaaacatgaagctcgatgataatgttgat
ctagagagggttgcaagagacacacatggttatgtcggagctgatcttgctgccttgtgc
actgaggctgcactgcagtgtatcagggagaaaatggatgttattgacttggaggatgag
accattgatgctgaagtgttgaattcaatggctgtgactaatgagcattttcaaactgct
ctgggtgcttcaaatccatcagcactgcgagaaacggtagtggaggttcccaatacatct
tgggaggatattggggggctggaaaatgtcaagcgggaacttcaagagactgttcagtac
ccggtcgagcatcctgaaaagtttgagaagtttggaatgtcaccctccaaaggggtactt
ttctatggaccacctggttgtggcaaaactttactggccaaggctatcgcaaatgagtgt
caggctaactttataagtgtgaaaggaccggagttgcttacaatgtggtttggagaaagt
gaagcgaatgttcgggaaatatttgacaaggcacggcaatctgctccatgtgtactgttc
tttgatgaactcgattccattgctacgcagagaggaaattcggtgggagatgctggtggt
gctgctgatagagtactcaatcaattgttgacagagatggatggaatgacagcaaagaaa
acagttttcatcattggggcaacaaataggccagacattattgaccctgcattgctcagg
ccaggtcgtcttgaccaattaatttacatccccctcccggatgaagcttctcgtcttcaa
atcttcaaagcatgcttgcgtaagtcccctgtcgcaaaggacgtggatctgtcagctcta
gcacggtatacacatggttttagtggtgcagacataaccgagatttgtcagcgagcatgc
aaatacgccattagggaaaacattgaaaaggatattgagagagagaggaagaggagcttg
aaccctgaagccatggatgaagatgacaccgatgaagtggctgaaataaaggctgcacac
tttgaggagtccatgaaatatgctcgaagaagtgtgagtgatgctgacattaggaagtac
cagctttttgctcaaacattacaacaatcacgcggacttggaactgagttcaaatttgct
gagcatgcagctaatgctacaccaaccggggcaacagccgacccatttgcttctgttaac
gctgctggagacgaggatgatttgtacagttaa
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