Solanum pennellii: 107013517
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Entry
107013517 CDS
T04130
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107013517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107013517
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107013517
mRNA degradation factors
5'-3' decay
Decapping complex
107013517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
107013517
NCBI-ProteinID:
XP_015068895
LinkDB
All DBs
Position
1:complement(3892839..3899226)
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AA seq
368 aa
AA seq
DB search
MSQNGKLMPNLDQNSKKLLNLTVLQRIDPFVEEILITAAHVTLYEFNIDNSQWSRKDVEG
SLFVVKRSAQPRFQFIVMNRRNTDNLVEDLLGDFEFELQLPYLLYRNSSQEVNGIWFYNS
RECEEVANLFNRILSAYSKVPTKFKLPTNQSEFEELEAVPSMSVMDGPLEPSSTTSNTAD
VPDDRSFVNFFSNAMRIGSGPNAAVQGQSYDSAAVVLPSSRPPPAVPPSSAPAPSPSPPL
STSLTLMPTVDAPEPDTSARRSSNLVKPSSFVGPPPSSSPLIPPVSSSVPTAPPLHSPGN
LQCHYGAPLLQPFPPPNLPPSLTPTSAPSPNNGHVISRDKVREAFLMLVQDNQFIDMVYR
ALVNAHHT
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaacgggaaattaatgcctaatttggaccaaaacagtaaaaaacttcttaac
ttaacggttcttcagagaatagatccatttgttgaagaaatcttgattactgctgctcat
gttactctatatgaattcaatatcgataatagccaatggagtcgaaaggatgtggaagga
tccttgtttgttgtcaagaggagtgctcaacctcggtttcagttcattgttatgaaccgc
agaaatacagataatttggtggaggatcttttgggagattttgagttcgagctccagctc
ccatatttattatatcgaaattcttcacaagaagtaaatggcatatggttctacaattca
cgtgaatgtgaagaagttgcaaacctctttaacaggatactgagtgcttattccaaggtg
cctaccaagttcaaattaccaaccaaccagagtgaatttgaagagctggaagcagttcca
agcatgtcggtaatggatggtcccctggagccatcatctactacatcaaatactgcagat
gtcccagatgatcgttccttcgtgaattttttcagtaatgctatgagaattggtagtggt
ccaaatgctgcagttcagggacagtcgtatgactcagctgcagtagtcctaccttcttct
cgtcctcctcctgctgtacctccctcttcagcacctgcaccgtctccatctcctcctctt
tctacatctttgactttgatgcctacagtcgatgctcctgaacctgataccagtgctaga
aggtcttcaaatctcgttaagccatcatcattcgttggtcctcctccttcctcttctcca
ctgatacctcctgtctcttcatctgtgcctactgctcctccacttcattcccctgggaat
cttcaatgccattacggagctcctttgcttcagccatttcctcctccgaatctgcctcca
tctctcactcctacttctgctcctagcccaaacaatggacatgtcattagcagagacaaa
gtgcgggaggcatttttgatgcttgttcaagataaccaattcattgacatggtataccgc
gctcttgtgaacgctcatcatacatga
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