Solanum pennellii: 107014039
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Entry
107014039 CDS
T04130
Name
(RefSeq) clathrin heavy chain 1-like
KO
K04646
clathrin heavy chain
Organism
spen
Solanum pennellii
Pathway
spen04142
Lysosome
spen04144
Endocytosis
spen05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107014039
04142 Lysosome
107014039
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
107014039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107014039
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spen04147
]
107014039
Membrane trafficking [BR:
spen04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
107014039
Exosome [BR:
spen04147
]
Exosomal proteins
Proteins found in most exosomes
107014039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
IcmW
Motif
Other DBs
NCBI-GeneID:
107014039
NCBI-ProteinID:
XP_015069393
UniProt:
A0ABM1GD28
LinkDB
All DBs
Position
3:complement(60070858..60083949)
Genome browser
AA seq
1702 aa
AA seq
DB search
MAAATAPIIMKETLTLPSAGVNQQFINFTNVTMESEKYICVRETSPQNSVVIIDMNMPMQ
PLRRPITADSAIMNPNSRILALKAQVPGTTQDHLQIFNIEAKQKIKSYQMPEQVVFWKWI
TPQILGIVTQTSVYHWPIEGDTEPIKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGS
PERPQLVKGNMQLYSVDQQRSQSLEAHAASFASFRVPGSDRDSILISFATKSLNAGQVIS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISHKYSLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASSIGGFYAINRRGQVLLATVNETTIIPFVSGQLNNLEL
AVNLAKRGNLPGAETLVVQRFQELFAQTKYKEAAELAAESPQGILRTSDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHGFLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYTELPDIKRVIVNTHAI
EPQALVEFFGTVSREWALECMKDLLVINIKGNLQIIVQVAKEYCEQLGVDACIKLFEQFK
SYDGLYFFLGSYLSSSEDPEIHFKYVEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPANAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQSRY
VVERMDGDLWEKVLNPENEFRRQLIDQVVSTALPESKSPEQVSATVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPARVMDYINRLDNFDGPAVGDVAVEAQLYE
EAFAIFKKFNLNVQGVNVLLDNIRDINRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE
SFIRADDTTQFLDVIRAAEDADVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIDRLSDI
EEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFTSNWAKLAITLVKLSQFQGAVDAARK
ANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRHEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTVMNHSPDAWDHMQFKDIAVKVANVELYYKAVHFYLQEHPDLINDLLNVL
ALRVDHTRVVDIMRKAGHLRLVKPYMIAVQSNNVSSVNEALNEIYVEEEDYDRLRESVDL
HDNFDQIGLAQKIEKHKLLEMRRVAAYIYKRAGRWKQSIALSKKDNLYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELAWMNNMIDFAFPYLLQFIREY
TGKVDELIKDKIEAQSEAKAKENEEKDVMKQQNMYAQLLPLALPAPPMPGMGGGFGPSQP
PPMGGMGMPPMPPFGMPPMGPY
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctactgcaccgatcattatgaaagagacccttacattgccaagtgcaggg
gttaaccagcagttcattaacttcacaaatgtaacaatggaatcagaaaagtatatatgt
gttcgggagacatcaccacaaaatagtgtggtcattattgatatgaatatgccaatgcag
cctttgcgccgtcctattactgctgactctgctattatgaatcccaattccagaattttg
gctctaaaagctcaagtaccaggaactactcaagatcacttacaaattttcaatattgag
gcaaagcagaaaataaagtcatatcagatgcctgagcaggttgttttctggaagtggatt
accccgcagattttaggtatcgtcacacagacgtcagtctatcattggccaattgaaggt
gatactgagcctataaagatgtttgatagaacagccaatctagccaataatcaaataatc
aattatcgttgtgatccttcagagaaatggttggttttgattggtatagccccaggttcg
ccagagaggccccaactggtcaaaggaaatatgcaattatattcagtggatcagcaacga
agtcaatctctagaggcacacgctgcatcatttgcatcattcagagtacctggaagtgat
agagattccatactcatttcttttgccacaaaatccttgaatgctggacaggttatatca
aaattgcatgtcattgagctcggagctcagccagggaaaccttcatttacaaaaaaacag
gcggaccttttcttccctccagattttgctgatgatttcccagtttccatgcagatatct
cataagtatagtttaatttatgtcatcacaaagcttggacttcttttcgtctacgacctg
gaaacagctactgcggtatacagaaataggattagcccagaccctattttcctgacagct
gaagcttcgtcaattggtggtttctatgccatcaacaggcgaggccaagtgttgctagcc
acagtaaatgaaacaactattataccttttgtcagtggacaattgaacaatctggagctt
gctgttaatcttgccaaaagaggaaatcttcccggtgccgagactttggttgtccagcgc
ttccaagaattgtttgcccaaacaaagtacaaagaggcagctgagcttgctgcggaatca
cctcagggcattctccgtacgtctgatactgttgccaaatttcagagcgttcctgttcaa
gcagggcaaacacctcctcttttgcagtactttgggacacttttgacaaaagggaagctc
aatgcttttgagtctttggaactgtcacgcctcgttgtcaaccaaaataagaagaacctt
ttggagaactggttagctgaggataagctggagtgcagtgaggaacttggcgatcttgtg
aagactgttgataatgatctcgccttgaagatatacatcaaagcaagagcaactccaaaa
gttgttgctgctttcgctgagcgcagggaatttgacaagattctgatatattccaagcag
gttggctatacacctgactatctgttcctcctgcaaacaattcttcgatctgatcctcag
ggagctgttaactttgcactcatgatgtcccaaatggagggcggttgtccagttgattat
aatacaatcactgatctttttctacagaggaacatgatccgtgaggcaacagcatttttg
ttggatgttctgaagcctaaccttccagaacatggtttcttgcagactaaggtgttggaa
atcaatcttgtgactttccccaatgtagcagatgctattttagcaaacggaatgttcagt
cactatgatcgacctcgaattgctcaactttgtgaaaaggctggtctatacatccgggct
ctgcagcactatactgaactccctgatatcaagcgtgtcattgtgaacacacatgcaatt
gagcctcaggctctggttgagttctttgggactgtttcacgtgaatgggctcttgagtgc
atgaaggacctgctagtgatcaacatcaaaggcaaccttcaaataattgtccaggtagcg
aaagagtattgtgagcagttgggtgttgatgcctgcataaagctttttgagcaattcaag
tcttatgatgggttgtacttcttcttgggatcatatttgagttccagtgaggatcctgaa
attcacttcaagtatgttgaggctgctgcaaagactggacaaatcaaggaagttgagcgc
gtgacacgagaatcaaacttttatgaccctgaaaagacaaagaacttcttgatggaagcc
aagcttcctgatgctcggcctctaattaatgtttgtgaccgttttggttttgttcctgat
ctcacacactacctctataccaataacatgctacggtatattgaaggttatgtccaaaag
gtcaacccagcaaatgctcctttagttgtgggacagctattggatgatgagtgtcctgag
gattttattaaaggcttgatcctttctgttcgttctctgctacctgttgagccccttgtg
gatgaatgtgaaaagaggaaccgcctccgactgctcactcagttcttggagcatcttgtg
agtgaaggaagccaagatgtgcatgtacacaatgctctgggtaagatcatcatagatagc
aacaataacccagagcacttcctgacaaccaacccatactatgattcacgtgttgtgggt
aaatattgtgagaagcgcgatcctacccttgctgttgttgcatataggagaggccaatgt
gatgatgaacttattaatgtaaccaacaagaactctttgttcaaactacaatccaggtat
gtcgttgagaggatggatggtgatctctgggagaaagttcttaaccctgaaaatgagttc
agaaggcagcttatcgatcaagttgtctccactgctctgcctgagagcaaaagcccagaa
caagtttctgctactgttaaagctttcatgactgctgatcttccgcatgaactgattgaa
cttcttgaaaagattgtcctccagaattctgcattcagtgggaactttaatctgcaaaac
ttgcttatcttgacagccattaaagctgatccagctagagttatggattatatcaacagg
cttgataattttgatggacctgctgtaggggatgtagctgtagaagcccaactttatgaa
gaagcttttgcaatcttcaagaagttcaatttaaatgtccagggtgtcaatgttctgcta
gataatattcgtgatataaaccgtgctgtcgagtttgccttccgagttgaagaagatgct
gtttggagccaagtcgctaaagctcaactcagagaaggattagtcagtgatgctattgag
tcatttatccgtgcagatgataccacccaatttttggatgtcattcgtgctgcagaggat
gctgatgtttaccatgacttggtgaagtatctgctgatggtaaggcaaaagacaaaggag
cccaaggttgacagtgaactaatctatgcatatgctaaaatagatcgattgagtgacatt
gaagagtttattctcatgccaaatgttgccaatctaccaaatgttggtgaccggttgtat
gatgaagccctgtatgaggctgcaaagatcatatttgcttttacttctaactgggccaaa
ttggctatcacacttgtaaagctaagtcaatttcaaggtgctgttgatgcagcacgtaaa
gcaaatagttcaaaaacatggaaagaagtctgctttgcttgtgtcgatgctgaagagttc
cgcttagctcaaatttgtgggctcaacattatagtacaggtggatgatctggaggaagtg
agtgaatattaccaaaacagaggatgtttcaacgaattgatctcccttatggagagtggg
ctgggtttggagcgcgcccatatgggtatcttcacagaacttggtgtcctttatgccaga
taccgtcatgagaagctcatggaacacataaaattattttccacccgtctcaacattccc
aagcttattcgtgcctgtgatgagcagcaacactggaaagaattaacttatttgtatatc
caatatgatgaatttgataatgctgccactaccgtcatgaatcattctccagatgcttgg
gatcatatgcagttcaaagacattgctgtcaaagttgctaatgtggagctttattacaag
gccgtccacttctatttgcaagaacatcctgatctcatcaatgatcttttaaatgttctt
gcacttagagtggaccacacccgtgtagtcgacataatgagaaaggcgggtcatcttcgc
ctagtgaagccttacatgattgctgttcaaagtaacaacgtttcttctgtaaatgaggcc
cttaatgagatatatgttgaagaagaagattatgatagattacgtgaatcagtagatttg
catgataacttcgaccagattggtcttgcgcagaagatagagaagcacaagcttcttgag
atgaggcgtgttgctgcttatatttataaaagggctggtcggtggaaacaatccattgct
ctgtcgaagaaagataacctttacaaagatgcaatggagactgcctcacaatctggggat
cgtgagcttgctgaagagttgcttgtttacttcattgaacagggaaagaaagaatgcttc
gcgtcatgcctatttgtttgttatgatttgattcgcccggatgttgcccttgagcttgca
tggatgaataatatgattgactttgcattcccatacctgttacagtttattcgtgaatat
accggcaaggttgatgagctgataaaagataaaatagaggctcaaagtgaagcaaaagcc
aaagagaatgaagagaaggacgttatgaagcagcagaatatgtatgcacagttgctgcct
ctggctttgcctgctccaccaatgccgggtatgggaggaggttttggtccatcccagcca
cctccaatgggcggaatgggaatgcctccgatgcctccatttggtatgccacccatgggt
ccctactaa
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