KEGG   Solanum pennellii: 107014089
Entry
107014089         CDS       T04130                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
spen  Solanum pennellii
Pathway
spen03082  ATP-dependent chromatin remodeling
spen03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107014089
   03083 Polycomb repressive complex
    107014089
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:spen03036]
    107014089
Enzymes [BR:spen01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107014089
Chromosome and associated proteins [BR:spen03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     107014089
   HDAC complexes
    Sin3A-HDAC complex
     107014089
    BRAF-HDAC complex
     107014089
    REST complex
     107014089
    SHIP complex
     107014089
    MiDAC complex
     107014089
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     107014089
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107014089
  Chromatin remodeling factors
   NuRD complex
    107014089
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 107014089
NCBI-ProteinID: XP_015069441
LinkDB
Position
3:67099408..67103013
AA seq 456 aa
MDSSVVEGGASLRSPGTDATNRRVSYLFDSSIGEYYYGEGHPMKPHRIRVAHNLILNYNL
HRKMEIIEPFPATKKEIGWFHSSDYVEFLSSVSPETVNDKYDSYQRRRFNVGTDSESFDC
PIFYGLFDFCQTSAGGSIGAAAKLNRNEADIAINWAGGLHHAKKSEASGFCYVNDIVLGI
LELLKVHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGHIKDIGASTGK
YYALNAPLNNGIDDESFRSLFRPVIQKVMEVYQPEAVVLQCGADSLAGDRLGVFNLSVKG
HADCIRFLRSFNVPLMMLGGGGYTVKNVARCWCYETAVAVGVEPDNDLPYNEFYEYFAPD
YILYHESLHMKNENTPSELERIRNTLLEQLSRLPHVPSVPFQVTPSVTEVPEKEDENMDQ
RPKPEIEMSQDYDTDNEEKSNNGKFSNYYNYFNDEN
NT seq 1371 nt   +upstreamnt  +downstreamnt
atggattcttcagtcgtggagggcggcgcatcgctccgttcaccgggtaccgacgctaca
aaccgtcgtgtttcttatttgttcgactcttccatcggcgaatattattacggcgagggt
catccaatgaagcctcaccgtattcgtgttgcccacaatcttattttaaactataatctt
caccgtaaaatggagataattgaaccgtttccggcgactaagaaggaaattgggtggttt
cactcgtcggactatgtggagtttctctcttcagtttctccggagactgttaatgacaag
tacgattcctaccagcgtagacgcttcaatgttggtacggactcggaaagctttgattgt
cctattttttatgggctttttgatttttgtcaaacttcagctggtggctcaattggcgcc
gccgctaagcttaatcggaatgaagctgatatagctatcaattgggctggtgggttgcat
catgcaaagaaaagtgaagcttctggattttgctatgtcaatgatattgttcttggaatt
ctagaacttctcaaggtccacaagcgtgtattgtatgtagacattgatgttcatcacggg
gatggagttgaggaggctttttacaccactgatcgggttatgacagtgtctttccataag
tttggagactactttcctggtacagggcatatcaaagacattggtgcaagtaccgggaag
tactatgccttaaatgcaccattgaataatggtattgatgatgaaagtttccgtagtcta
ttccgtcctgtaatccaaaaagtgatggaggtttatcaacctgaagctgttgttcttcaa
tgtggtgctgattcactagcaggagacaggttgggtgtctttaacttgtctgttaaaggc
catgcagattgcattcgattcctcaggtctttcaatgtccctttaatgatgttgggtggt
ggaggttataccgttaaaaacgttgctcggtgctggtgctatgagacagcagttgcagtt
ggagtagagcctgataatgatttgccttacaatgagttttacgagtattttgcccctgat
tatattctttatcatgaatcattacatatgaagaatgaaaatacgccctcggaactagag
aggatcaggaacactttgctggagcaactctcgcgtttaccccatgtacccagtgttcca
tttcaagtgacaccttccgtaacagaggttccagaaaaggaagacgaaaacatggatcaa
aggcctaaaccagagatagaaatgagccaagattacgatactgacaacgaggagaagtca
aataacggaaagttcagtaattactacaattactttaacgacgagaactga

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