Solanum pennellii: 107014381
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Entry
107014381 CDS
T04130
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107014381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107014381
Enzymes [BR:
spen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107014381
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107014381
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107014381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
107014381
NCBI-ProteinID:
XP_015069751
UniProt:
A0ABM1GDX9
LinkDB
All DBs
Position
3:22675362..22686281
Genome browser
AA seq
592 aa
AA seq
DB search
MLTVVRVHLPSDIPIVGCELTPYILLRRPDSLLISDDIPESAPVYGCFLRYKWYRIQSDK
HVAMCSIHPSEQATLQCLACVKAKIPVAKSYHCSPKCFSDAWQHHRLLHERAASAVNANG
NEENTGSGVNTSLTSLQSSGSLTNGTTPFPVVVTQRSGGETWFEVGRSKTYTPSADDIGH
TLKFECAIINAVTKLTVGNASTMMSRVIPAPSPTPRRLISVSGVDIPLHLDLDSRLSSSG
TFTVLSYNILSDAYATNELYSYCPSWALAWTYRRQNLLREIAGYRADIVCLQEVQSDHFE
EFFAPELDKHGYQALFKRKTTEVISGNINTVDGCATFFRRDRFAHVKKYEVEFNKAAQSL
TEALVPSAQKKTALNRLLKDNIALIVVLEAKFNSQGVDNTGKRQLVCVANTHVNVHQELK
DVRLWQVHTLLKGLEKIAATADIPMLLCGDFNSAPGSAPHALVSMGKVDPMHPELAVDPF
GILRPATKLTHHLPLVSAYTSFAQIPVVPGLAQKRRKLDPSTNEPLFTSCTKDHFGTLDY
IFYSADSVTVESLLELLDEESLRKDTALPSPQWSSDHIALLAGFRCKPRTRR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctgactgtggtgcgggttcatctcccgtctgacattcccattgtaggctgtgaactt
accccctatattttgttgcgtcgtcctgattcattactcatttctgatgatatccctgaa
tccgcccctgtttacggctgtttcttgagatataagtggtaccgaatacaaagtgataaa
catgttgccatgtgcagcatccatccatctgagcaagctacgctgcagtgccttgcatgt
gtgaaggccaaaatccctgttgccaagagttaccattgctccccaaaatgtttctcagat
gcatggcagcatcatcgtcttctgcatgaacgtgctgctagtgctgtgaatgcaaatgga
aatgaggaaaatacaggatctggtgttaatacaagcttgacttctttgcaatcaagcggt
agcttgacaaatggaacaacaccttttcctgtagtagtaactcaaagaagtggtggtgaa
acttggtttgaagttggacgctctaaaacttacaccccatctgcagatgatattggtcac
acccttaaatttgaatgtgctatcatcaatgcagtaacaaaattaactgttggaaatgct
agtaccatgatgtctcgagtgattcctgctccatctcctactccacgtcgcttgatttca
gttagtggagttgatataccactgcatctggacttagatagtcgtttatcatcttcagga
acttttactgtgctctcatacaacattctgtctgatgcatatgcaacaaatgaattgtac
agttattgcccctcttgggctcttgcttggacttaccggagacaaaatctattgcgtgaa
atagctggctaccgtgcagacattgtttgcctccaagaggttcagagtgatcactttgaa
gaattctttgctcctgagctggacaaacatggttatcaagctttgttcaaaagaaaaaca
actgaggtgatcagtgggaatatcaataccgttgatggttgtgccacatttttccgccga
gatagattcgcacatgttaaaaaatatgaggttgagttcaacaaagctgctcaatctttg
actgaagccttagttcccagcgcccaaaagaagaccgcattaaatcgtttgctgaaggat
aatattgcacttattgtggttctggaagcaaagttcaatagccagggggttgacaacact
gggaagcgtcaacttgtttgtgtggctaacacacatgtaaatgttcatcaagagttgaag
gatgtcagactttggcaggttcacacacttttaaaaggactagagaaaattgctgctact
gctgacattccaatgctgctctgtggcgattttaattcagcgcctggaagtgctcctcat
gcacttgtttcaatggggaaagttgatccaatgcatccagagttagcagtggaccctttt
ggtattttgcgtccagccacaaagttaacacatcatctgccattggtaagtgcttacaca
tcctttgcccaaatacctgtggttcctggactagctcagaaacggaggaagcttgatccc
agtacgaacgaacctttgtttacaagctgcaccaaagatcattttgggactcttgattat
atattctattctgccgactctgtaacagttgaatcgttgttagagctcttggatgaggaa
agcttgagaaaagacacagcacttccttctccacagtggtcctctgatcatatagcactc
ttagctgggtttcggtgcaagcctagaactaggcgttga
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