Solanum pennellii: 107014385
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Entry
107014385 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107014385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107014385
03012 Translation factors [BR:
spen03012
]
107014385
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107014385
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107014385
Translation factors [BR:
spen03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107014385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Dicer_dimer
T2SSE
AAA_16
ATPase
NACHT
PhoH
RETICULATA-like
AAA_11
Motif
Other DBs
NCBI-GeneID:
107014385
NCBI-ProteinID:
XP_015069753
LinkDB
All DBs
Position
3:72261192..72271734
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AA seq
1200 aa
AA seq
DB search
MPYTNLIQNCLKVRLKANQFLSTMSTSLQFCPNRFHFETNPLLYRSSQSVIPQKRCLHGS
VGFFCSAKGSSSSSSVVLRRKRHGSSSSSSYPSPYFYQQNLGYGRFAYDECESESESDRE
TQSSKQLGESTLHNIEEWRWKLSMLMRKKDDQEVVSTDKKDRRDFEHISAMATRMGLHCR
QYEKTIVCSKVPLPNYRPDLDVKRPQREVVLHYGLQSRVGDLLEAHLSKKSVNKGNLTHN
AFLRGSNDNSSPNDKELHENEKPFARNVVAERILRRRSLEMRNKQEDWQGSPEGQKMLEL
RRNLPAYKEREALLRAISENQVVVVSGETGCGKTTQLPQYILEAEIEAARGATCNIICTQ
PRRISAMSVAERVAAERGENLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLVDRKLE
GVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELKLILMSATLNAELFSSYYGGAPMIHI
PGFTYPVRSHFLENILEMTRYRLTPYNQIDNYGQDKMWKMQKQTIRKRKTQIASAVEESL
ESADFGQYNPLTRDSLSCWNPDSIGFNLIEHVLCHICRNERPGAVLVFMTGWDDINTVKD
QLQAHPLLGDPSRVLLLACHGSMASAEQKLIFDKPEDGIRKIVLATNMAETSITINDVVF
VVDCGKAKETSYDAINNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVYEAFAD
YQLPELLRTPLQSLCLQIKSLQLGSISDFLSKAIQSPEPLSVQNAIEYLKTIGALDEDEN
LTVLGHNLSMLPVEPKLGKMIILGVVFNCLDPVLTVVAGLSARDPFLMPFDKKDLAESAK
AQFSARDFSDHLALVRAYDGWKDAERQQSGYDYCWRNFLSAQTLKAMDSLRKQFLYLLKD
IGLVDSIQSCNAWSNNEHLVRAIVCGGLFPGICSVVNKEKSISLKTMEDGGVLLYSNSVN
AQEPQIPYPWLVFNEKVKVNAVFLRDSTAVSDSVVLLFGGSISGKALDGHLMMLGGYLEF
FMNPSLANTYISLKRELNELVHKKLSDRNFDVGSHGELLEAVKLLVSEDQCEGKFVYGRK
PSPKKSAKELQKNVVSKKGSGGENPKSHLQTLLARAGHQSPSYKITQLKNNKFRATVIFN
GLNFSGQPSSSKKDAEKDAAAEALQWLTGETQSSSKAVEHMSALLKKSKSKNQLYSTKWR
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgccttacactaatcttattcagaactgcctcaaggtgaggcttaaagccaatcaattt
ctatccactatgtccacttctcttcaattttgtccaaatcgttttcactttgaaacaaac
cctcttctttaccgctcgtcacagtcagtaatacctcaaaaacgatgccttcatggaagt
gttggattcttttgttcagctaaggggtcttcttcttcgtcgtctgttgtgttgaggcgg
aaaagacatggttcatcttcgtcttcttcttatccttctccgtatttttatcagcagaat
ttggggtatggaagatttgcttacgatgagtgtgagtcggagtcggagtctgatcgtgaa
actcagtcgtctaagcaattgggtgaatcaacccttcataacattgaagaatggaggtgg
aaattaagcatgctaatgcgcaaaaaggatgaccaagaagtggtctcaacggataaaaag
gatcgacgtgattttgagcatatatcagctatggcaactagaatgggtttacactgccgc
cagtatgaaaaaacaattgtgtgtagcaaagttccattgccaaattataggccagatttg
gatgttaagcgtccacaaagagaggtagtattacattatggattacaaagtagggtaggt
gatcttcttgaagcacatctttctaaaaagtcagtaaacaagggaaatctgacacataat
gctttcttgagaggaagcaatgacaacagttctcccaatgataaagagcttcatgagaat
gagaagccatttgcacgaaatgttgtagcagagaggattctcaggcgaaggagcttggag
atgcgtaataaacaagaagattggcagggatctcctgaaggccagaagatgctagaactt
cgaagaaatctccctgcatataaagagagagaggcattgcttagagccatttctgagaat
caggtggtggttgtgtctggggaaactggatgtggtaaaactacccaattgcctcagtac
attttagaagctgagatagaagctgctcgcggagctacttgcaatatcatttgtactcaa
ccaaggcgaatatctgctatgtctgttgctgaaagagttgctgcagagcgtggggagaat
ctgggagaatctgtgggttataaggttcggcttgagggcatgagagggagggatacccgc
ctcttattttgcacaactggtattcttctgaggagattactggttgatagaaagttggaa
ggtgtcactcacgttattgtagacgagattcatgaacgcggaatgaatgaagatttcctt
ctaattgtccttaaagatctccttccccgtcgacctgaattgaagctgattttgatgagt
gctactcttaatgccgagctcttctcttcctattatggtggcgccccaatgatccatatt
cctggttttacttatcccgttcgaagtcattttctggaaaatattttggaaatgactaga
taccggttaactccatataatcaaattgataactatggtcaagacaagatgtggaaaatg
cagaaacagactattaggaagaggaagacccaaattgcttcagctgttgaggaatcgcta
gaatcagctgattttgggcagtataatcctctgactagggattcactatcctgttggaat
cctgattcaattggcttcaaccttattgagcatgtgctttgtcacatatgtagaaacgaa
agacctggtgctgtgttggtttttatgactggttgggatgacattaatactgtgaaggac
cagctgcaggctcatccactgttgggggatccaagcagggttttgctgcttgcatgtcat
ggttccatggccagtgcagagcagaaattgatttttgataagccagaggatggaatcagg
aaaattgtgttagctaccaacatggctgaaacaagtatcaccataaatgacgtggttttt
gtggtcgactgtggaaaggcaaaagagacatcttatgatgcaatcaacaacactccctgt
ttgcttccttcatggatttcaaaagcttcagctcggcaaagaaaaggaagagctggccgt
gttcagcctggcgagtgttatcatctatatcccagatgtgtatatgaagcttttgcagac
tatcaactgccagagcttctgagaacacctttacagtccctatgcctgcagattaaaagc
ttacaacttggaagtatatcagactttctatccaaggcaatccagtcaccagaaccacta
tctgttcagaatgctattgagtatttgaagacaataggggctctagatgaggatgaaaat
ctgacagtacttggacacaacctatcaatgcttccagttgagccaaaactggggaaaatg
ataatattaggtgtagtattcaactgcctggatccagttctgacagttgttgctggttta
agtgctagagatccatttttaatgccatttgacaagaaggatcttgctgagtctgccaaa
gcccagttttctgctcgtgacttcagtgatcaccttgctcttgttcgggcttatgatggc
tggaaagatgctgaaaggcagcaatctggttatgattactgttggagaaatttcctttct
gcacaaactctcaaagcgatggactcccttcgaaagcaatttttatatctgctcaaggac
attggtttagttgatagcattcagagttgtaatgcctggagtaacaatgaacatctggtt
cgagcgattgtatgtggtggactattccctggcatatgctctgttgtgaacaaggaaaag
tcaatctcattgaaaaccatggaggatggtggagtccttttatactctaattctgtcaac
gctcaagaacctcaaattccatacccatggcttgtcttcaacgaaaaagttaaagtgaat
gcagtattcctgcgtgattctacagctgtatctgattctgttgtactcttatttggcgga
agcatttccggaaaagctttagatggacacttgatgatgcttggaggatacttggagttt
ttcatgaacccctcactggcaaatacttacataagcttgaagagggagcttaatgaactt
gtccataagaaactctcggaccgtaattttgatgtaggaagtcatggtgagctattagaa
gctgttaaattgctggtgtcagaggatcaatgtgaaggtaaatttgtctatggtcgtaaa
ccgtcccccaagaagtctgcaaaggagttacagaaaaatgtcgtttcaaagaagggcagt
ggtggtgagaatccgaagtctcatctccaaacgttgcttgctcgggctggccaccaatca
cccagttataagataacacagctaaaaaataataagttccgcgccactgtaatattcaat
gggttaaatttttctggccagcctagcagtagcaagaaggatgctgaaaaagatgcagct
gctgaagctctacagtggttgactggtgagacccaatcctcttctaaagctgttgaacac
atgtcagcacttctgaagaaaagcaagagtaaaaatcaactttatagtacaaaatggagg
taa
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