Solanum pennellii: 107014417
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Entry
107014417 CDS
T04130
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107014417
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107014417
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107014417
NCBI-ProteinID:
XP_015069803
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Position
3:complement(49122317..49126606)
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AA seq
504 aa
AA seq
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MSSQSLFYRAKMPPATPILLFIYLILSFFSPLIDSQLNLTLPNQHPYPESVVHQLHRRVN
ESRLLLQTTVRDNKCHSTGNPIDDCWQCDPNWAKDRQRLADCSIGFGQSAMGGKGGQIYV
VRDSSDRDTVNPVPGTLRHAVVQEEPLWIVFAADMVIKLKHELIINNYKTIDGRGANVHI
TGNGCITLQYVSNVIIHNVHIYNCVPSGNTNIRSSPTHVGWRGKSDGDGISIFGSHNIWI
DHCALSHCTDGLIDAIMGSTAITISNNYFSHHDDVMLLGHDDKYLPDSGMQVTIAFNHFG
EGLVQRMPRIRRGYVHVVNNDFTHWQMYAIGGSANPTINSQGNRYTAPDDPNLKEVTKRE
DTDNGQWDEWNWRTDGDTMVNGAFFVPSGQGLSNQYTKAYSVDPKSALLINQLTANAGVL
GGPRDNSISILPEVGGGTSEGSGRGHDQSNSGSVDLFGMIFSGTGASAAAPPTTTPILFS
FFILLTLYIITITTQLSIPFLHLL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccagagtttgttttacagggcaaagatgcctcctgccactcccattctctta
tttatctacctcattctctccttcttctcacctctaattgattcccaactcaatcttacc
cttccaaaccaacacccttatcctgaatctgttgttcaccaacttcacaggagggttaat
gagtctagattactactccagacaactgtaagagataacaaatgtcacagtacaggaaac
ccaatagatgattgctggcaatgcgacccaaactgggccaaagaccggcaaaggctagca
gactgctccattggtttcggtcagagtgcaatgggtgggaaaggaggtcagatctacgta
gttagagactcctccgacagagacacagtcaacccagttccgggcactctccgtcacgcc
gtagttcaagaggaacctctttggatcgtgtttgcagcagacatggttataaagctaaag
cacgagcttattatcaacaactacaagaccatcgacggacggggagcaaatgttcacatc
accggcaatgggtgtattacattacagtatgtgagcaatgtgattatacataatgttcat
atttacaattgtgtcccttcgggtaatactaacatacggtcgagcccaacgcacgttggg
tggagaggcaaatcggacggtgatggtatatccatctttggatctcataatatctggatt
gatcactgtgcattatctcattgtaccgacggtttgattgatgcaatcatggggtctact
gctattaccatatcgaataactattttagtcatcatgatgatgttatgctcttgggacat
gatgataaatacttgcctgattcaggaatgcaggtgacaattgcattcaatcatttcgga
gaaggattagtgcaaagaatgccaagaattagaagaggatatgtacatgtggtgaacaac
gatttcacacactggcaaatgtatgcaattggtggaagtgctaatcctaccattaacagt
caaggaaatcgatatactgctcccgatgatccaaatttgaaggaggtgacgaagcgggag
gacacagacaatgggcagtgggatgaatggaattggaggacggacggggacactatggtt
aatggcgcattttttgtgccttcagggcaaggccttagcaaccaatataccaaagcctac
agcgttgatcccaaatccgcccttctaatcaaccagctcaccgccaatgctggtgtcctt
ggtggccccagggacaatagcataagcatcttacccgaagtgggcggcggcactagtgaa
ggaagcggcaggggtcatgaccagtccaatagcggcagtgtcgacttgttcggaatgata
ttcagcggtactggtgcatctgcagcagcaccaccaacaaccacccctatcttattctcc
tttttcattcttctcactttgtacatcataactatcaccactcaattatcaataccattc
ttacacttgctatag
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