Solanum pennellii: 107014471
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Entry
107014471 CDS
T04130
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X3
KO
K06672
cohesin loading factor subunit SCC2
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spen03036
]
107014471
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
107014471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
Cnd1
PHD
PDS5
zf-HC5HC2H_2
PHD_2
zf-PHD-like
IFRD
C1_1
Motif
Other DBs
NCBI-GeneID:
107014471
NCBI-ProteinID:
XP_015069880
LinkDB
All DBs
Position
3:27090292..27114381
Genome browser
AA seq
1782 aa
AA seq
DB search
MANSSGSSGVPQGISLSNTVHSEIAPSLPLPSLPVFCGALDHQLRLFDERSESRSLNRSD
ILIHANKIADLLHNTDISYLNLRADASSQSHGFVGHLDLHNEVLNCNSEAFALINAGPIK
ETARSRKANSNSLESVPAVQLPQQGTVEIHNYQHDHVISDVTASSRKPKVKKKGRESTLL
SSGPDASECQDAVAAGFCEMLEDFCGRAEIFSEEREEREFLAVSVADLKVVLREITSIRA
KKALNSIPVDNLVRFLRVLDHQIHRAEGLSINDSEHMDAEVVSSIFCALESIHAALAIMA
YNGMPKQLYKEEIIERIVEFSRHQVMDVIFGSDPVYRALHKPPERGIPEGEEDEEVNGDF
VSPNRKKRSTRSAKPRKSTSNKVSSAVGNILQKLDVILGFLKELCTIEHLPDSCVIQLIK
TCFTTFVVENIQLLQMKSISLISGIFYAYTQHRASIMDEALLILLKLPSSKRMPRTYPLP
DEEQRQIQFITALLIQIVHSSSNLPDVLRESSDSPSLEVSVDASYPTKSCESVTEACCLF
WSRVLQRLTNTKNQEAAELKTMIENLVIDLLTTLNLPEYPASAPLLEVLCVLLLQNAGLK
SKDISVRSMAIDLLGTIAARLKQDAVRCREEKFWIVKELRSGEMIDRNPPKDACSVCSDT
RIEKSLVQCHGCQRLFHLNCTGIRGHDIPNRGFHCQMCISKKQLLVLKSLCESQSNDAGQ
NNRTNSGKMSQVAEAITNLEIVQQLLLNYLRDAATVDDLHLFTRWFYLCLWYKDDPNSEQ
KFMYYVARLKSQAIVRDSGSLSSLMTRESAKKITLALGQNSSFSRGFDKILQVLLASLRE
NSPIIRAKALRAVSIIVEADPEVLGDKLVQTAVEGRFCDSAISAREAALELVGRHIASYP
DVGLKYFEKLAERIKDTGVSVRKRAIKIIRDMCTSNSNFSELTTACVEIISRVNDEESSV
QDLVCKTFYEFWFEEPSGSQHHYFGDGSSVPLEVAKKTEQIVQMLRRMPSLQLLVTVIKR
NLALDFFSQSAKAVGINPASLASVRRRCELMCKCLLEKILQVIEMNTGEGEVLMLPYMRL
LHAFCVVDPTLCAPASDPSQFVITLQPYLKSQADNRVAAQLLESIIFVIDSVLPLLRKLP
ESVAEELEQDLKQMIVRHSFLTVVHACIKCLCSVSNVAGRGSTIVEHLIQLFFKRLDALG
FSNKQHFQQVGRSLFCLGLLIRYSSSLLHASVSSNNLHVSSSLNLFKKYLQAEDFVIKVR
SLQALGYVFIARPECMLEKDVGRILEATLSSNTDTRLKMQSLQNMYEYLLDAESQMGTNN
ASENEVANTAVGGPSVPVAAGAGDTNICGGIIQLYWSKILERCLDVNEQVRQSSLKIVEV
VLRQGLVHPITCVPSLIALETDPQEVNSKLAHHLLMNMNEKYPSFFESRLGDGLQMSFMF
IQAMNKGDSQSLKPQSKAPGIMSGKSEPGSFTHARLGVSRIYKLIRGNRISRNKFMASVV
RKFDTPSWGDLVGPFLIYCTEILASLPFTSPDEPLYLIYSINRIIQVRAGTVEANMKGFL
QFLQAGYQKLNGSGGIQTESNQPIRCQTETMVASTKVEEVLEGDHVGVDYGSVKPYMPHL
ASLNPHGISNTDLQMIQVECLAAGALQLLLRLKRHLKILYDLNDARCQAYSPNDPLKPGE
SLSKQSLPFNVNEINIEHPKNYEDFVRRYQEFKNALKEDTVDYAIYTANIKRKRAAPRRS
RKSGRMMGGGEDEEYEEDEDWGSGMKSSNSGRRSSSRLRQHL
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattcaagtggcagtagtggtgttcctcaaggtataagtttatcgaatacagtg
cactctgaaattgccccgtctttgcctttgccgtcacttcctgtcttctgcggcgcactc
gatcaccaacttaggttgtttgacgagcggagtgaatccagatcgttgaatcggagtgac
atactcattcacgctaacaaaattgctgatctgcttcacaatacagacatttcttatttg
aaccttagagctgatgcaagttcacaatctcatggctttgtgggacaccttgacctgcat
aatgaagtgcttaactgtaactctgaagcctttgctctaataaatgcaggccccattaag
gagactgcacgaagtcgcaaggctaattcaaattctcttgagagtgtacctgctgtccaa
cttccacaacaaggcactgtagagatccacaattatcagcacgaccatgttattagtgat
gttactgcatcttctaggaaaccaaaagtcaagaagaaaggaagggagagcaccttacta
tcaagtggccctgatgcttctgaatgtcaagatgcagttgcagcaggtttttgtgagatg
ttggaagatttttgtggcagggcagaaatttttagtgaggagcgggaggaaagagaattt
ttagcagtgtctgtggcagatcttaaagttgttctgagggagatcacatccatccgagca
aagaaagcactgaattcgattccagttgataatctagtaagatttcttagggtcttagat
caccagattcatcgagcagaaggtttatcaattaatgatagtgaacatatggatgcagag
gttgtgtcatcgattttctgtgctttagagtccattcatgcagctttagctataatggct
tacaatgggatgcctaagcaattgtataaggaagaaattattgaaagaatcgtggagttc
tcccggcaccaagttatggatgttatctttggtagtgatcccgtgtaccgtgcactgcac
aaaccacccgagagggggattcctgaaggtgaagaagatgaagaggtcaatggggatttt
gtttcaccaaataggaagaagagatctactaggagtgcaaaaccaaggaaatcaacatca
aacaaggtttcttctgctgttggtaatatacttcagaagcttgatgtgattcttggtttt
cttaaggagttgtgcactatagagcatctaccagacagttgcgttattcaacttattaag
acttgtttcacaacatttgtggttgaaaacatccagcttttgcaaatgaaatcaataagc
ttaataagtgggatattttatgcatacacacagcatcgtgcttctataatggatgaagca
cttctgattcttttgaaattaccctcttctaagcgcatgcccagaacttatcctctacct
gatgaagagcagaggcaaatccagttcatcactgctcttttaattcaaatagttcacagc
agttcaaaccttccagatgttttgagggaatcatctgacagtccttctctagaagtctca
gttgatgccagttaccctaccaaatcttgtgagtcagtcacggaagcgtgctgtcttttc
tggagtcgtgttcttcaacgtctaacaaacacaaaaaatcaggaggcagctgagttgaag
acaatgattgagaatcttgtcattgatctgttaactactttgaatttgcctgaatatcca
gcctctgctcctcttttggaggttctttgtgttttactccttcaaaatgctgggttgaaa
tctaaagatatttctgttcgttcgatggccattgaccttcttggcacaattgctgcaagg
ctgaaacaagatgcagtccgctgtagggaggagaaattctggatagtaaaggagttgaga
agtggggaaatgattgaccggaatcctcccaaggatgcatgttctgtttgttcggatacc
aggattgaaaaatcacttgttcaatgccatggttgtcagagactatttcatcttaactgt
actggaatcaggggtcatgatattccgaatcgcggctttcattgccagatgtgtatctcc
aagaagcaacttcttgtactgaaatcactatgcgagtctcagtccaatgatgctgggcaa
aataaccgtactaactcaggaaaaatgtcacaagttgctgaggcaatcacaaatttggag
attgttcagcagctactactgaattatctccgtgatgctgcaactgtggatgatttacat
ctatttactcgctggttctatctttgtctttggtacaaagatgaccctaattcagagcaa
aagttcatgtattatgttgcacgattaaagtcacaagcaattgtgcgtgactctggttct
ctttcttcgctaatgacaagagagtcggcaaaaaagataactttagcattgggacagaat
agttctttttctagaggatttgacaagattctgcaagtgcttctggcaagtttgcgggag
aactctccaataattcgtgcaaaggcattgcgagcagttagtatcattgttgaggctgac
ccagaggttttgggtgataagcttgtccaaacagcagtggaagggaggttttgtgactct
gctatatctgcccgagaagctgcgttggaacttgtaggcaggcatattgcttcatatcct
gatgttggtctgaagtactttgagaagttggcggagagaataaaggatactggagtaagc
gtgcgaaagcgtgctatcaaaatcatacgggacatgtgcacttcaaattctaacttctca
gagttaactactgcttgcgttgaaattatttcccgagttaatgatgaggaatccagtgta
caggacctggtctgcaagacattttatgagttttggtttgaagaaccttctggttcacaa
catcattatttcggagatggaagttctgttccacttgaggtggctaagaaaacagagcaa
attgttcagatgctgagaaggatgcccagtcttcaacttcttgtaactgtgattaaacgc
aacttagcccttgatttcttttcacaatctgctaaagctgtcggtatcaaccccgcgtcc
cttgcctcagtccgtaggcgctgcgagttgatgtgcaagtgcttacttgagaaaatactg
caggtgatagagatgaatacgggagaaggagaggtgcttatgctaccatacatgaggctc
ttgcatgccttttgtgttgttgatcctactctatgtgcaccagcttctgatccttcccag
tttgtgatcacgctacaaccttatttgaagagtcaggctgataatcgagttgctgcccag
cttttggagagtataatctttgtgattgattctgttttgcctttactaaggaagcttcct
gaaagtgttgctgaagaacttgaacaagatctgaagcaaatgattgttcggcattctttc
ttgacagttgtccatgcttgcatcaagtgcctctgctctgtaagtaatgttgctggaaga
ggctcaactatcgttgaacaccttatccagttattcttcaaacgccttgatgccctaggt
ttcagtaacaagcagcactttcagcaagtgggccggtctcttttctgcctgggtttgtta
atacgttacagtagctcattattgcatgcatctgtttccagtaacaacttacatgtttct
agcagcctcaacctatttaagaaatatcttcaggccgaagactttgttatcaaggtccgc
tcattgcaggcactgggctatgtttttattgctcgccctgaatgcatgctggaaaaggat
gtaggaagaattttggaggccacactttcttctaatactgatacacggctcaagatgcaa
tctctgcaaaacatgtatgagtatcttcttgatgctgaaagtcaaatgggaacaaataat
gcaagcgagaatgaagttgctaacacagcagttggtggccctagtgtgcctgttgctgca
ggggctggtgataccaacatttgtgggggaataattcagttgtattggtctaaaatttta
gaaagatgcctggatgtgaatgaacaagtgcgtcagtcttctcttaagattgtggaagtt
gtactgcgtcaaggtcttgttcatcctattacctgtgttccctctttgatagctcttgaa
acagatccgcaggaggtgaactcaaagctggctcatcatttgttgatgaacatgaatgag
aagtatccatccttctttgagagtcgtcttggtgatggtctacaaatgtcatttatgttc
atacaggccatgaataaaggtgattctcaaagtttaaaaccgcagtccaaagctccaggt
atcatgtcaggaaagtcagagcctggctcatttacccatgcaaggctcggggtatctcga
atctacaagctcatccgtggaaatcgtatttcaaggaacaaatttatggcctcagttgtg
cgcaaatttgatacgccaagctggggtgatttagtgggcccatttttgatatactgcact
gaaatccttgcttcgcttccattcacatcgcctgatgagcccctttatttgatctattct
ataaatcggattattcaagttagggctggcacggtggaggcaaatatgaagggattttta
caattcttacaagcaggctatcaaaaattaaatggaagtgggggcattcaaacagagtct
aatcaacctattaggtgtcagactgaaacaatggttgccagcacaaaagttgaggaagtg
ttggaaggtgaccatgttggtgtagattatggatcagtgaagccatatatgccccatttg
gcatcattaaatccacatggcatatcaaatactgatttgcagatgatccaggtggagtgt
ctggcagctggtgctttacagttacttctgaggctaaagaggcacctcaagattctgtat
gatctaaatgatgcccgttgccaggcatattctccaaatgatcccctaaaacctggggaa
agtctttcaaagcaaagtcttcctttcaatgtgaatgaaattaacattgagcacccaaag
aattatgaagactttgtccggagatatcaggaattcaagaatgccttgaaggaagataca
gtggactatgcaatctacacggcgaacattaaaaggaaacgcgctgctccaagaagaagc
aggaaatctggtcgaatgatgggtggtggtgaggatgaagagtatgaagaggatgaagat
tggggtagtggaatgaagagtagtaatagtggcagaagaagcagtagcaggttaaggcag
cacctgtga
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integrated database retrieval system
